Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM38O00635 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
TRIM38O00635 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM38O00635 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM38O00635 AC084364.1-201ENST00000551967 1556 ntBASIC14.86□□□□□ -0.03
TRIM38O00635 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM38O00635 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
TRIM38O00635 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM38O00635 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM38O00635 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
TRIM38O00635 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
TRIM38O00635 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM38O00635 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM38O00635 AC126915.1-201ENST00000522847 1038 ntBASIC14.86□□□□□ -0.03
TRIM38O00635 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC14.86□□□□□ -0.03
TRIM38O00635 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC14.86□□□□□ -0.03
TRIM38O00635 NKG7-204ENST00000595217 816 ntTSL 2 BASIC14.86□□□□□ -0.03
TRIM38O00635 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC14.86□□□□□ -0.03
TRIM38O00635 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM38O00635 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM38O00635 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
TRIM38O00635 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC14.86□□□□□ -0.03
TRIM38O00635 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM38O00635 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM38O00635 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM38O00635 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM38O00635 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM38O00635 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
TRIM38O00635 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC14.86□□□□□ -0.03
TRIM38O00635 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM38O00635 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
TRIM38O00635 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM38O00635 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM38O00635 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM38O00635 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM38O00635 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM38O00635 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
TRIM38O00635 SLC9A7P1-202ENST00000556476 2239 ntBASIC14.85□□□□□ -0.03
TRIM38O00635 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM38O00635 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
TRIM38O00635 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM38O00635 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM38O00635 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM38O00635 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM38O00635 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM38O00635 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC14.85□□□□□ -0.03
TRIM38O00635 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM38O00635 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
TRIM38O00635 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC14.85□□□□□ -0.03
TRIM38O00635 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC14.85□□□□□ -0.03
TRIM38O00635 CSH2-202ENST00000345366 598 ntTSL 5 BASIC14.85□□□□□ -0.03
TRIM38O00635 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC14.85□□□□□ -0.03
TRIM38O00635 AC092506.1-202ENST00000401022 528 ntBASIC14.85□□□□□ -0.03
TRIM38O00635 LSM5-207ENST00000410044 687 ntTSL 3 BASIC14.85□□□□□ -0.03
TRIM38O00635 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC14.85□□□□□ -0.03
TRIM38O00635 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM38O00635 AC079178.1-201ENST00000420915 656 ntBASIC14.85□□□□□ -0.03
TRIM38O00635 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM38O00635 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC14.85□□□□□ -0.03
TRIM38O00635 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC14.85□□□□□ -0.03
TRIM38O00635 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM38O00635 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC14.85□□□□□ -0.03
TRIM38O00635 PPY2P-201ENST00000582808 702 ntBASIC14.85□□□□□ -0.03
TRIM38O00635 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM38O00635 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC14.85□□□□□ -0.03
TRIM38O00635 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC14.85□□□□□ -0.03
TRIM38O00635 OR10B1P-201ENST00000601666 907 ntBASIC14.85□□□□□ -0.03
TRIM38O00635 AC244157.2-201ENST00000616239 1006 ntBASIC14.85□□□□□ -0.03
TRIM38O00635 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC14.85□□□□□ -0.03
TRIM38O00635 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC14.85□□□□□ -0.03
TRIM38O00635 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC14.85□□□□□ -0.03
TRIM38O00635 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC14.85□□□□□ -0.03
TRIM38O00635 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM38O00635 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
TRIM38O00635 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC14.85□□□□□ -0.03
TRIM38O00635 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM38O00635 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC14.85□□□□□ -0.03
TRIM38O00635 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM38O00635 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM38O00635 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM38O00635 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM38O00635 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM38O00635 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM38O00635 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC14.85□□□□□ -0.03
TRIM38O00635 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC14.85□□□□□ -0.03
TRIM38O00635 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC14.85□□□□□ -0.03
TRIM38O00635 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM38O00635 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC14.85□□□□□ -0.03
TRIM38O00635 AC092135.3-201ENST00000624151 1846 ntBASIC14.85□□□□□ -0.03
TRIM38O00635 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
TRIM38O00635 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM38O00635 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRIM38O00635 ANKRD30BP2-201ENST00000435744 1610 ntBASIC14.84□□□□□ -0.03
TRIM38O00635 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRIM38O00635 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRIM38O00635 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC14.84□□□□□ -0.03
TRIM38O00635 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC14.84□□□□□ -0.03
TRIM38O00635 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
TRIM38O00635 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
TRIM38O00635 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms