Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 AC131206.1-201ENST00000538078 1211 ntBASIC11.94□□□□□ -0.5
FOXA2Q9Y261 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 RPL28-207ENST00000558815 616 ntTSL 2 BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 AL035252.4-201ENST00000624174 288 ntBASIC11.94□□□□□ -0.5
FOXA2Q9Y261 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA2Q9Y261 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 AC005229.1-201ENST00000392885 409 ntBASIC11.93□□□□□ -0.5
FOXA2Q9Y261 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 AC008735.3-201ENST00000596646 500 ntBASIC11.93□□□□□ -0.5
FOXA2Q9Y261 AC233724.13-201ENST00000598383 410 ntBASIC11.93□□□□□ -0.5
FOXA2Q9Y261 AL022328.1-201ENST00000610050 478 ntBASIC11.93□□□□□ -0.5
FOXA2Q9Y261 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 AC215219.1-201ENST00000400706 1817 ntBASIC11.93□□□□□ -0.5
FOXA2Q9Y261 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
FOXA2Q9Y261 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA2Q9Y261 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC11.92□□□□□ -0.5
FOXA2Q9Y261 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA2Q9Y261 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA2Q9Y261 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA2Q9Y261 AC063926.2-201ENST00000623766 1308 ntBASIC11.92□□□□□ -0.5
FOXA2Q9Y261 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
FOXA2Q9Y261 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA2Q9Y261 AC012617.1-204ENST00000586340 2305 ntBASIC11.92□□□□□ -0.5
FOXA2Q9Y261 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC11.92□□□□□ -0.5
FOXA2Q9Y261 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA2Q9Y261 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC11.92□□□□□ -0.5
FOXA2Q9Y261 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC11.92□□□□□ -0.5
FOXA2Q9Y261 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA2Q9Y261 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA2Q9Y261 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC11.92□□□□□ -0.5
FOXA2Q9Y261 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms