Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC39Q9UFE4 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
CCDC39Q9UFE4 USP31-203ENST00000567975 2142 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC39Q9UFE4 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC39Q9UFE4 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC39Q9UFE4 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC39Q9UFE4 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC39Q9UFE4 ZNF641-201ENST00000301042 4544 ntTSL 5 BASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 TAS1R3-201ENST00000339381 3433 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 ARHGEF9-230ENST00000637178 2145 ntTSL 5 BASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 RAPGEF3-218ENST00000548919 2776 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 CALY-202ENST00000368555 783 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 MIR661-201ENST00000384842 89 ntBASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 PIN1P1-201ENST00000412108 996 ntBASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 AC098850.1-201ENST00000419919 790 ntBASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 AC002472.2-201ENST00000442739 958 ntBASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 API5-211ENST00000534695 560 ntTSL 5 BASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 IFT20-206ENST00000578122 834 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 IFT20-208ENST00000578985 831 ntTSL 3 BASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 TGFBR3-204ENST00000465892 2908 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 APBB1-201ENST00000299402 2636 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 TBC1D9B-208ENST00000519746 2755 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 ZBTB1-201ENST00000358738 4119 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC39Q9UFE4 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 KLHL34-201ENST00000379499 3641 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 EHMT2-201ENST00000375528 4047 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 RPS6KA1-213ENST00000526792 2596 ntTSL 5 BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 HAL-202ENST00000538703 2637 ntTSL 2 BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 AL137783.1-201ENST00000623494 1896 ntBASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 STRA6-203ENST00000416286 2750 ntTSL 5 BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 NSL1-201ENST00000366976 722 ntTSL 2 BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 AL139094.1-201ENST00000405549 1188 ntBASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 AC114812.1-204ENST00000449669 728 ntBASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 GALT-202ENST00000450095 1280 ntTSL 2 BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 OARD1-208ENST00000469104 704 ntTSL 2 BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 HNRNPA1P13-201ENST00000510646 963 ntBASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 MIR4745-201ENST00000577608 62 ntBASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 APOB-202ENST00000399256 3128 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 AC083964.2-201ENST00000623988 2396 ntBASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms