Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 ALG1L6P-201ENST00000515248 758 ntBASIC16.55■□□□□ 0.24
CCNA1P78396 RNA5SP417-201ENST00000516459 108 ntBASIC16.55■□□□□ 0.24
CCNA1P78396 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC16.55■□□□□ 0.24
CCNA1P78396 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CCNA1P78396 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC16.55■□□□□ 0.24
CCNA1P78396 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.55■□□□□ 0.24
CCNA1P78396 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCNA1P78396 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCNA1P78396 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCNA1P78396 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC16.55■□□□□ 0.24
CCNA1P78396 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCNA1P78396 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC16.55■□□□□ 0.24
CCNA1P78396 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCNA1P78396 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCNA1P78396 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CCNA1P78396 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CCNA1P78396 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CCNA1P78396 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCNA1P78396 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
CCNA1P78396 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCNA1P78396 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC16.54■□□□□ 0.24
CCNA1P78396 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CCNA1P78396 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CCNA1P78396 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC16.54■□□□□ 0.24
CCNA1P78396 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CCNA1P78396 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC16.54■□□□□ 0.24
CCNA1P78396 LCK-206ENST00000373564 2137 ntTSL 5 BASIC16.54■□□□□ 0.24
CCNA1P78396 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCNA1P78396 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCNA1P78396 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCNA1P78396 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CCNA1P78396 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCNA1P78396 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCNA1P78396 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
CCNA1P78396 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCNA1P78396 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
CCNA1P78396 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
CCNA1P78396 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCNA1P78396 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CCNA1P78396 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC16.54■□□□□ 0.24
CCNA1P78396 AC092580.1-201ENST00000433998 658 ntBASIC16.54■□□□□ 0.24
CCNA1P78396 ZAP70-202ENST00000451498 1085 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CCNA1P78396 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC16.54■□□□□ 0.24
CCNA1P78396 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC16.54■□□□□ 0.24
CCNA1P78396 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
CCNA1P78396 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC16.54■□□□□ 0.24
CCNA1P78396 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
CCNA1P78396 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
CCNA1P78396 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC16.54■□□□□ 0.24
CCNA1P78396 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC16.54■□□□□ 0.24
CCNA1P78396 MIR2392-201ENST00000584881 84 ntBASIC16.54■□□□□ 0.24
CCNA1P78396 SIGLEC22P-201ENST00000599104 714 ntBASIC16.54■□□□□ 0.24
CCNA1P78396 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC16.54■□□□□ 0.24
CCNA1P78396 MIR6756-201ENST00000616240 63 ntBASIC16.54■□□□□ 0.24
CCNA1P78396 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC16.54■□□□□ 0.24
CCNA1P78396 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCNA1P78396 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
CCNA1P78396 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CCNA1P78396 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCNA1P78396 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC16.54■□□□□ 0.24
CCNA1P78396 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CCNA1P78396 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC16.54■□□□□ 0.24
CCNA1P78396 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC16.54■□□□□ 0.24
CCNA1P78396 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCNA1P78396 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
CCNA1P78396 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
CCNA1P78396 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCNA1P78396 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
CCNA1P78396 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC16.53■□□□□ 0.24
CCNA1P78396 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
CCNA1P78396 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCNA1P78396 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCNA1P78396 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
CCNA1P78396 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
CCNA1P78396 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CCNA1P78396 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC16.53■□□□□ 0.24
CCNA1P78396 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC16.53■□□□□ 0.24
CCNA1P78396 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC16.53■□□□□ 0.24
CCNA1P78396 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCNA1P78396 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCNA1P78396 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCNA1P78396 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
CCNA1P78396 MIR645-201ENST00000385283 94 ntBASIC16.53■□□□□ 0.24
CCNA1P78396 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCNA1P78396 LINC01868-201ENST00000414965 562 ntTSL 4 BASIC16.53■□□□□ 0.24
CCNA1P78396 AC098934.1-203ENST00000442868 1262 ntBASIC16.53■□□□□ 0.24
CCNA1P78396 AC018638.5-201ENST00000450885 754 ntBASIC16.53■□□□□ 0.24
CCNA1P78396 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC16.53■□□□□ 0.24
CCNA1P78396 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
CCNA1P78396 AREG-202ENST00000502307 956 ntTSL 5 BASIC16.53■□□□□ 0.24
CCNA1P78396 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC16.53■□□□□ 0.24
CCNA1P78396 OR5BD1P-201ENST00000532527 817 ntBASIC16.53■□□□□ 0.24
CCNA1P78396 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC16.53■□□□□ 0.24
CCNA1P78396 RN7SL665P-201ENST00000578793 300 ntBASIC16.53■□□□□ 0.24
CCNA1P78396 SKA2-205ENST00000580541 689 ntTSL 3 BASIC16.53■□□□□ 0.24
CCNA1P78396 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC16.53■□□□□ 0.24
CCNA1P78396 AC127024.7-201ENST00000625101 200 ntBASIC16.53■□□□□ 0.24
CCNA1P78396 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC16.53■□□□□ 0.24
CCNA1P78396 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
CCNA1P78396 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms