Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
SOX3P41225 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
SOX3P41225 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
SOX3P41225 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC13.92□□□□□ -0.18
SOX3P41225 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SOX3P41225 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
SOX3P41225 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SOX3P41225 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC13.92□□□□□ -0.18
SOX3P41225 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC13.92□□□□□ -0.18
SOX3P41225 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
SOX3P41225 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SOX3P41225 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC13.92□□□□□ -0.18
SOX3P41225 MPI-203ENST00000535694 1523 ntTSL 2 BASIC13.92□□□□□ -0.18
SOX3P41225 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
SOX3P41225 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SOX3P41225 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
SOX3P41225 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC13.92□□□□□ -0.18
SOX3P41225 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SOX3P41225 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SOX3P41225 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
SOX3P41225 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
SOX3P41225 CD8B2-202ENST00000417670 633 ntBASIC13.92□□□□□ -0.18
SOX3P41225 POM121L8P-201ENST00000417732 1281 ntBASIC13.92□□□□□ -0.18
SOX3P41225 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SOX3P41225 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC13.92□□□□□ -0.18
SOX3P41225 POM121L9P-203ENST00000441984 1285 ntBASIC13.92□□□□□ -0.18
SOX3P41225 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC13.92□□□□□ -0.18
SOX3P41225 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
SOX3P41225 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC13.92□□□□□ -0.18
SOX3P41225 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC13.92□□□□□ -0.18
SOX3P41225 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SOX3P41225 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC13.92□□□□□ -0.18
SOX3P41225 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SOX3P41225 AC010328.2-201ENST00000597698 1111 ntBASIC13.92□□□□□ -0.18
SOX3P41225 TECR-220ENST00000600083 1204 ntTSL 2 BASIC13.92□□□□□ -0.18
SOX3P41225 AC009542.2-202ENST00000619004 1067 ntBASIC13.92□□□□□ -0.18
SOX3P41225 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC13.92□□□□□ -0.18
SOX3P41225 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SOX3P41225 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC13.92□□□□□ -0.18
SOX3P41225 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
SOX3P41225 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
SOX3P41225 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
SOX3P41225 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SOX3P41225 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SOX3P41225 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
SOX3P41225 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC13.92□□□□□ -0.18
SOX3P41225 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SOX3P41225 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SOX3P41225 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
SOX3P41225 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SOX3P41225 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
SOX3P41225 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SOX3P41225 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SOX3P41225 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC13.91□□□□□ -0.18
SOX3P41225 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SOX3P41225 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SOX3P41225 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
SOX3P41225 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
SOX3P41225 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SOX3P41225 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SOX3P41225 REXO1L6P-201ENST00000603433 1515 ntBASIC13.91□□□□□ -0.18
SOX3P41225 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SOX3P41225 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC13.91□□□□□ -0.18
SOX3P41225 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SOX3P41225 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SOX3P41225 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC13.91□□□□□ -0.18
SOX3P41225 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SOX3P41225 RPF1-202ENST00000370656 724 ntTSL 2 BASIC13.91□□□□□ -0.18
SOX3P41225 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SOX3P41225 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SOX3P41225 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC13.91□□□□□ -0.18
SOX3P41225 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SOX3P41225 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
SOX3P41225 PFN2-215ENST00000497148 743 ntTSL 4 BASIC13.91□□□□□ -0.18
SOX3P41225 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC13.91□□□□□ -0.18
SOX3P41225 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC13.91□□□□□ -0.18
SOX3P41225 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SOX3P41225 HNRNPA1P48-202ENST00000565308 961 ntBASIC13.91□□□□□ -0.18
SOX3P41225 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC13.91□□□□□ -0.18
SOX3P41225 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC13.91□□□□□ -0.18
SOX3P41225 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC13.91□□□□□ -0.18
SOX3P41225 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SOX3P41225 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SOX3P41225 LILRP1-201ENST00000444199 1370 ntBASIC13.91□□□□□ -0.18
SOX3P41225 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC13.91□□□□□ -0.18
SOX3P41225 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC13.91□□□□□ -0.18
SOX3P41225 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SOX3P41225 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SOX3P41225 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC13.91□□□□□ -0.18
SOX3P41225 AC067750.1-201ENST00000608826 6545 ntBASIC13.91□□□□□ -0.18
SOX3P41225 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SOX3P41225 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SOX3P41225 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
SOX3P41225 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC13.91□□□□□ -0.18
SOX3P41225 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SOX3P41225 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SOX3P41225 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC13.91□□□□□ -0.18
SOX3P41225 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC13.9□□□□□ -0.18
SOX3P41225 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SOX3P41225 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC13.9□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 65.6 ms