Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
MSX2P35548 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
MSX2P35548 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
MSX2P35548 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
MSX2P35548 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC14.1□□□□□ -0.15
MSX2P35548 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
MSX2P35548 IMP4-203ENST00000409935 958 ntTSL 5 BASIC14.1□□□□□ -0.15
MSX2P35548 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC14.1□□□□□ -0.15
MSX2P35548 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
MSX2P35548 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC14.1□□□□□ -0.15
MSX2P35548 AC010336.2-201ENST00000564226 506 ntBASIC14.1□□□□□ -0.15
MSX2P35548 AC051619.7-201ENST00000568314 623 ntBASIC14.1□□□□□ -0.15
MSX2P35548 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC14.1□□□□□ -0.15
MSX2P35548 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC14.1□□□□□ -0.15
MSX2P35548 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC14.1□□□□□ -0.15
MSX2P35548 HINT3-201ENST00000229633 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
MSX2P35548 PRPF40B-209ENST00000548825 3307 ntAPPRIS P2 TSL 5 BASIC14.1□□□□□ -0.15
MSX2P35548 GSE1-203ENST00000405402 4366 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
MSX2P35548 CCDC126-202ENST00000409765 2324 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
MSX2P35548 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC14.1□□□□□ -0.15
MSX2P35548 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
MSX2P35548 AGAP12P-201ENST00000585227 2359 ntBASIC14.1□□□□□ -0.15
MSX2P35548 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
MSX2P35548 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
MSX2P35548 DNM3-201ENST00000355305 3280 ntTSL 5 BASIC14.1□□□□□ -0.15
MSX2P35548 INTS6-201ENST00000311234 3662 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
MSX2P35548 CAMSAP3-201ENST00000160298 3889 ntAPPRIS P3 TSL 2 BASIC14.1□□□□□ -0.15
MSX2P35548 CTCFL-208ENST00000432255 2955 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
MSX2P35548 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
MSX2P35548 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
MSX2P35548 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
MSX2P35548 C16orf82-201ENST00000418886 2268 ntAPPRIS ALT2 BASIC14.1□□□□□ -0.15
MSX2P35548 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
MSX2P35548 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
MSX2P35548 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
MSX2P35548 BRSK2-202ENST00000382179 3576 ntTSL 2 BASIC14.09□□□□□ -0.15
MSX2P35548 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
MSX2P35548 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC14.09□□□□□ -0.15
MSX2P35548 MYO1G-201ENST00000258787 3267 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
MSX2P35548 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
MSX2P35548 PLPP6-201ENST00000381883 2944 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
MSX2P35548 RIMS1-218ENST00000522291 3876 ntTSL 5 BASIC14.09□□□□□ -0.15
MSX2P35548 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
MSX2P35548 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
MSX2P35548 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
MSX2P35548 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
MSX2P35548 LRCH3-203ENST00000425562 2970 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
MSX2P35548 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
MSX2P35548 CDIP1-201ENST00000399599 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
MSX2P35548 STOM-202ENST00000347359 870 ntTSL 2 BASIC14.09□□□□□ -0.15
MSX2P35548 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
MSX2P35548 PMP22-202ENST00000395936 816 ntTSL 3 BASIC14.09□□□□□ -0.15
MSX2P35548 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC14.09□□□□□ -0.15
MSX2P35548 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC14.09□□□□□ -0.15
MSX2P35548 AP000347.1-202ENST00000435868 847 ntBASIC14.09□□□□□ -0.15
MSX2P35548 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
MSX2P35548 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC14.09□□□□□ -0.15
MSX2P35548 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC14.09□□□□□ -0.15
MSX2P35548 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC14.09□□□□□ -0.15
MSX2P35548 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
MSX2P35548 MYO1C-218ENST00000575158 4804 ntAPPRIS P3 TSL 5 BASIC14.09□□□□□ -0.15
MSX2P35548 MYOM3-201ENST00000338909 2693 ntTSL 2 BASIC14.09□□□□□ -0.15
MSX2P35548 PDHA1-212ENST00000540249 3277 ntTSL 2 BASIC14.09□□□□□ -0.15
MSX2P35548 NPAS4-201ENST00000311034 3303 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
MSX2P35548 GLB1L-201ENST00000295759 2745 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
MSX2P35548 HFE-202ENST00000317896 1922 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
MSX2P35548 IFNA6-202ENST00000380210 1544 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
MSX2P35548 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
MSX2P35548 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
MSX2P35548 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
MSX2P35548 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
MSX2P35548 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
MSX2P35548 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
MSX2P35548 AAR2-202ENST00000373932 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
MSX2P35548 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
MSX2P35548 TRMT2B-206ENST00000545398 3106 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.15
MSX2P35548 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.15
MSX2P35548 AC015688.4-201ENST00000580780 1647 ntBASIC14.08□□□□□ -0.15
MSX2P35548 ALOX15B-202ENST00000380183 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
MSX2P35548 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
MSX2P35548 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC14.08□□□□□ -0.15
MSX2P35548 RIPK4-201ENST00000332512 3889 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
MSX2P35548 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
MSX2P35548 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
MSX2P35548 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC14.08□□□□□ -0.16
MSX2P35548 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
MSX2P35548 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
MSX2P35548 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC14.08□□□□□ -0.16
MSX2P35548 TRIM26-267ENST00000453195 3318 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
MSX2P35548 LINC01833-203ENST00000437916 2880 ntTSL 3 BASIC14.08□□□□□ -0.16
MSX2P35548 GDPD5-215ENST00000533805 2424 ntTSL 2 BASIC14.08□□□□□ -0.16
MSX2P35548 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
MSX2P35548 AC004832.2-201ENST00000426397 482 ntBASIC14.08□□□□□ -0.16
MSX2P35548 RPP21-221ENST00000428040 594 ntTSL 2 BASIC14.08□□□□□ -0.16
MSX2P35548 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC14.08□□□□□ -0.16
MSX2P35548 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
MSX2P35548 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC14.08□□□□□ -0.16
MSX2P35548 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC14.08□□□□□ -0.16
MSX2P35548 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
MSX2P35548 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC14.08□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 67.1 ms