Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CIITAP33076 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC16.46■□□□□ 0.23
CIITAP33076 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC16.46■□□□□ 0.23
CIITAP33076 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
CIITAP33076 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CIITAP33076 SLC16A6P1-201ENST00000413214 1059 ntBASIC16.46■□□□□ 0.23
CIITAP33076 AC011742.3-201ENST00000439053 820 ntBASIC16.46■□□□□ 0.23
CIITAP33076 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
CIITAP33076 RCC2P8-201ENST00000502779 1035 ntBASIC16.46■□□□□ 0.23
CIITAP33076 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CIITAP33076 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC16.46■□□□□ 0.23
CIITAP33076 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC16.46■□□□□ 0.23
CIITAP33076 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC16.46■□□□□ 0.23
CIITAP33076 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC16.46■□□□□ 0.23
CIITAP33076 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC16.46■□□□□ 0.23
CIITAP33076 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC16.46■□□□□ 0.23
CIITAP33076 NDUFV2P1-201ENST00000596415 907 ntBASIC16.46■□□□□ 0.23
CIITAP33076 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CIITAP33076 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
CIITAP33076 AL157813.1-201ENST00000612996 587 ntBASIC16.46■□□□□ 0.23
CIITAP33076 NID2-208ENST00000617139 3827 ntTSL 5 BASIC16.46■□□□□ 0.23
CIITAP33076 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC16.46■□□□□ 0.23
CIITAP33076 AL805961.1-203ENST00000641078 1258 ntBASIC16.46■□□□□ 0.23
CIITAP33076 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CIITAP33076 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CIITAP33076 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC16.46■□□□□ 0.23
CIITAP33076 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CIITAP33076 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC16.46■□□□□ 0.23
CIITAP33076 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
CIITAP33076 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CIITAP33076 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC16.46■□□□□ 0.23
CIITAP33076 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC16.46■□□□□ 0.22
CIITAP33076 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC16.46■□□□□ 0.22
CIITAP33076 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC16.45■□□□□ 0.22
CIITAP33076 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
CIITAP33076 AC099063.4-201ENST00000641099 1602 ntBASIC16.45■□□□□ 0.22
CIITAP33076 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CIITAP33076 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CIITAP33076 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
CIITAP33076 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
CIITAP33076 AC011498.7-201ENST00000624986 2027 ntBASIC16.45■□□□□ 0.22
CIITAP33076 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CIITAP33076 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC16.45■□□□□ 0.22
CIITAP33076 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC16.45■□□□□ 0.22
CIITAP33076 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CIITAP33076 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CIITAP33076 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC16.45■□□□□ 0.22
CIITAP33076 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CIITAP33076 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC16.45■□□□□ 0.22
CIITAP33076 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
CIITAP33076 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CIITAP33076 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC16.45■□□□□ 0.22
CIITAP33076 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC16.45■□□□□ 0.22
CIITAP33076 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC16.45■□□□□ 0.22
CIITAP33076 RN7SL774P-201ENST00000577467 290 ntBASIC16.45■□□□□ 0.22
CIITAP33076 DRG2-220ENST00000583355 891 ntTSL 3 BASIC16.45■□□□□ 0.22
CIITAP33076 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CIITAP33076 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC16.45■□□□□ 0.22
CIITAP33076 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC16.45■□□□□ 0.22
CIITAP33076 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC16.45■□□□□ 0.22
CIITAP33076 AC092299.1-201ENST00000632679 757 ntBASIC16.45■□□□□ 0.22
CIITAP33076 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CIITAP33076 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
CIITAP33076 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
CIITAP33076 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
CIITAP33076 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CIITAP33076 AC005912.2-201ENST00000619492 2400 ntBASIC16.45■□□□□ 0.22
CIITAP33076 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
CIITAP33076 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CIITAP33076 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC16.45■□□□□ 0.22
CIITAP33076 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CIITAP33076 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC16.44■□□□□ 0.22
CIITAP33076 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
CIITAP33076 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CIITAP33076 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
CIITAP33076 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CIITAP33076 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CIITAP33076 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
CIITAP33076 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC16.44■□□□□ 0.22
CIITAP33076 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC16.44■□□□□ 0.22
CIITAP33076 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CIITAP33076 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CIITAP33076 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CIITAP33076 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC16.44■□□□□ 0.22
CIITAP33076 SPTLC1P5-201ENST00000450718 252 ntBASIC16.44■□□□□ 0.22
CIITAP33076 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CIITAP33076 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC16.44■□□□□ 0.22
CIITAP33076 AC090386.2-201ENST00000623010 1039 ntBASIC16.44■□□□□ 0.22
CIITAP33076 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC16.44■□□□□ 0.22
CIITAP33076 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
CIITAP33076 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC16.44■□□□□ 0.22
CIITAP33076 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CIITAP33076 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CIITAP33076 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC16.44■□□□□ 0.22
CIITAP33076 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC16.44■□□□□ 0.22
CIITAP33076 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC16.44■□□□□ 0.22
CIITAP33076 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CIITAP33076 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
CIITAP33076 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CIITAP33076 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms