Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 OR7E115P-201ENST00000382617 1024 ntBASIC14.75□□□□□ -0.05
VCANP13611 AC078882.1-201ENST00000436132 416 ntTSL 2 BASIC14.75□□□□□ -0.05
VCANP13611 CU639417.1-201ENST00000464664 460 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
VCANP13611 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
VCANP13611 TROAP-209ENST00000549275 348 ntAPPRIS ALT2 TSL 3 BASIC14.75□□□□□ -0.05
VCANP13611 TROAP-210ENST00000549534 839 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
VCANP13611 H2BFS-201ENST00000599962 460 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
VCANP13611 PRR20FP-201ENST00000603320 180 ntBASIC14.75□□□□□ -0.05
VCANP13611 SPC25-201ENST00000282074 1354 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
VCANP13611 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
VCANP13611 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC14.75□□□□□ -0.05
VCANP13611 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
VCANP13611 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
VCANP13611 SESN3-201ENST00000278499 1710 ntTSL 2 BASIC14.75□□□□□ -0.05
VCANP13611 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC14.74□□□□□ -0.05
VCANP13611 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
VCANP13611 CIDEC-204ENST00000430427 877 ntTSL 3 BASIC14.74□□□□□ -0.05
VCANP13611 CFL1P1-204ENST00000456375 424 ntTSL 3 BASIC14.74□□□□□ -0.05
VCANP13611 RN7SL487P-201ENST00000468140 344 ntBASIC14.74□□□□□ -0.05
VCANP13611 TYMSP2-201ENST00000589501 424 ntBASIC14.74□□□□□ -0.05
VCANP13611 OR2V1-204ENST00000641551 2423 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
VCANP13611 GLDC-216ENST00000639639 1559 ntTSL 3 BASIC14.74□□□□□ -0.05
VCANP13611 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
VCANP13611 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC14.74□□□□□ -0.05
VCANP13611 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
VCANP13611 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
VCANP13611 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
VCANP13611 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VCANP13611 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC14.74□□□□□ -0.05
VCANP13611 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC14.74□□□□□ -0.05
VCANP13611 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC14.74□□□□□ -0.05
VCANP13611 CELA3A-202ENST00000374663 649 ntTSL 2 BASIC14.74□□□□□ -0.05
VCANP13611 KRTAP10-12-201ENST00000400365 873 ntAPPRIS P2 BASIC14.74□□□□□ -0.05
VCANP13611 ATRAID-202ENST00000405489 1059 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
VCANP13611 CICP12-201ENST00000455801 843 ntBASIC14.74□□□□□ -0.05
VCANP13611 METTL7AP1-201ENST00000547343 496 ntBASIC14.74□□□□□ -0.05
VCANP13611 PDLIM1P1-201ENST00000604187 969 ntBASIC14.74□□□□□ -0.05
VCANP13611 AC008555.6-201ENST00000605047 458 ntTSL 2 BASIC14.74□□□□□ -0.05
VCANP13611 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VCANP13611 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
VCANP13611 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VCANP13611 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
VCANP13611 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VCANP13611 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VCANP13611 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC14.74□□□□□ -0.05
VCANP13611 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC14.74□□□□□ -0.05
VCANP13611 MYC-206ENST00000613283 1365 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
VCANP13611 SUGT1-202ENST00000343788 1217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
VCANP13611 C10orf90-207ENST00000480379 1012 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
VCANP13611 AL136298.3-201ENST00000556746 445 ntBASIC14.74□□□□□ -0.05
VCANP13611 AC023825.2-201ENST00000562970 672 ntTSL 2 BASIC14.74□□□□□ -0.05
VCANP13611 AC002985.1-201ENST00000596918 685 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
VCANP13611 EFHB-202ENST00000344838 2389 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
VCANP13611 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC14.74□□□□□ -0.05
VCANP13611 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
VCANP13611 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC14.74□□□□□ -0.05
VCANP13611 STK33-217ENST00000534493 1895 ntTSL 2 BASIC14.74□□□□□ -0.05
VCANP13611 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VCANP13611 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC14.73□□□□□ -0.05
VCANP13611 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC14.73□□□□□ -0.05
VCANP13611 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VCANP13611 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VCANP13611 CTLA4-201ENST00000295854 525 ntTSL 5 BASIC14.73□□□□□ -0.05
VCANP13611 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VCANP13611 CNBP-202ENST00000441626 1040 ntTSL 2 BASIC14.73□□□□□ -0.05
VCANP13611 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC14.73□□□□□ -0.05
VCANP13611 HNRNPC-221ENST00000555883 1182 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
VCANP13611 LIMD2-210ENST00000582055 509 ntTSL 2 BASIC14.73□□□□□ -0.05
VCANP13611 KRTAP10-4-202ENST00000616689 597 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
VCANP13611 GABARAPL1-219ENST00000629504 379 ntTSL 4 BASIC14.73□□□□□ -0.05
VCANP13611 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC14.73□□□□□ -0.05
VCANP13611 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VCANP13611 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
VCANP13611 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
VCANP13611 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
VCANP13611 AC117503.4-201ENST00000623229 1418 ntBASIC14.73□□□□□ -0.05
VCANP13611 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC14.73□□□□□ -0.05
VCANP13611 SHISA5-206ENST00000426002 1839 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VCANP13611 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
VCANP13611 FCN2-202ENST00000350339 943 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
VCANP13611 GH1-203ENST00000351388 685 ntTSL 2 BASIC14.73□□□□□ -0.05
VCANP13611 NME2-201ENST00000393183 568 ntTSL 2 BASIC14.73□□□□□ -0.05
VCANP13611 AC073869.2-201ENST00000417338 1026 ntBASIC14.73□□□□□ -0.05
VCANP13611 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC14.73□□□□□ -0.05
VCANP13611 HNRNPA3P6-201ENST00000472163 1006 ntBASIC14.73□□□□□ -0.05
VCANP13611 RN7SL838P-201ENST00000481676 295 ntBASIC14.73□□□□□ -0.05
VCANP13611 AC010335.3-201ENST00000623767 531 ntBASIC14.73□□□□□ -0.05
VCANP13611 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VCANP13611 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
VCANP13611 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VCANP13611 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
VCANP13611 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VCANP13611 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
VCANP13611 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VCANP13611 PNLIP-201ENST00000369221 1483 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VCANP13611 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
VCANP13611 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VCANP13611 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
VCANP13611 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
VCANP13611 LINC00388-201ENST00000412714 663 ntTSL 5 BASIC14.73□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms