Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 AC009955.4-201ENST00000597192 544 ntBASIC14.72□□□□□ -0.05
SHOX2O60902 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC14.72□□□□□ -0.05
SHOX2O60902 GTF2F1-201ENST00000394456 2731 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SHOX2O60902 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC14.72□□□□□ -0.05
SHOX2O60902 AC241585.2-201ENST00000578899 2307 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SHOX2O60902 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC14.72□□□□□ -0.05
SHOX2O60902 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SHOX2O60902 NTNG1-206ENST00000370071 3149 ntTSL 5 BASIC14.72□□□□□ -0.05
SHOX2O60902 RNF214-201ENST00000300650 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SHOX2O60902 PPP1R11-205ENST00000376772 1731 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SHOX2O60902 AL136172.1-201ENST00000598590 1394 ntBASIC14.72□□□□□ -0.05
SHOX2O60902 LINC00567-201ENST00000569854 3409 ntBASIC14.72□□□□□ -0.05
SHOX2O60902 MSRB3-202ENST00000355192 4289 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SHOX2O60902 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SHOX2O60902 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SHOX2O60902 CC2D1A-201ENST00000318003 3581 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
SHOX2O60902 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
SHOX2O60902 C1RL-201ENST00000266542 3394 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SHOX2O60902 CPN2-201ENST00000323830 3028 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SHOX2O60902 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
SHOX2O60902 AC004147.4-201ENST00000636421 1844 ntTSL 5 BASIC14.71□□□□□ -0.05
SHOX2O60902 SSBP2-220ENST00000615665 4465 ntTSL 5 BASIC14.71□□□□□ -0.05
SHOX2O60902 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SHOX2O60902 RTN3-210ENST00000540798 3124 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SHOX2O60902 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SHOX2O60902 DNAJC14-202ENST00000317287 2774 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
SHOX2O60902 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC14.71□□□□□ -0.05
SHOX2O60902 AGAP2-203ENST00000547588 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
SHOX2O60902 OSBPL2-203ENST00000439951 3886 ntTSL 5 BASIC14.71□□□□□ -0.05
SHOX2O60902 ZNF774-201ENST00000354377 3202 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SHOX2O60902 ARHGEF1-203ENST00000354532 3243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
SHOX2O60902 MAMDC4-201ENST00000317446 3658 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
SHOX2O60902 PIM2-201ENST00000376509 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SHOX2O60902 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SHOX2O60902 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC14.71□□□□□ -0.05
SHOX2O60902 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SHOX2O60902 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SHOX2O60902 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC14.71□□□□□ -0.05
SHOX2O60902 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SHOX2O60902 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC14.71□□□□□ -0.05
SHOX2O60902 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC14.71□□□□□ -0.05
SHOX2O60902 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC14.71□□□□□ -0.05
SHOX2O60902 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC14.71□□□□□ -0.05
SHOX2O60902 AC112191.1-201ENST00000523689 701 ntBASIC14.71□□□□□ -0.05
SHOX2O60902 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SHOX2O60902 SORD2P-201ENST00000558556 1069 ntBASIC14.71□□□□□ -0.05
SHOX2O60902 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC14.71□□□□□ -0.05
SHOX2O60902 AC026150.2-201ENST00000564693 1156 ntBASIC14.71□□□□□ -0.05
SHOX2O60902 AL135744.1-201ENST00000565098 629 ntBASIC14.71□□□□□ -0.05
SHOX2O60902 KLK3-207ENST00000595952 969 ntTSL 3 BASIC14.71□□□□□ -0.05
SHOX2O60902 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC14.71□□□□□ -0.05
SHOX2O60902 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC14.71□□□□□ -0.05
SHOX2O60902 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC14.71□□□□□ -0.05
SHOX2O60902 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC14.71□□□□□ -0.05
SHOX2O60902 LINC00638-201ENST00000555578 2518 ntBASIC14.71□□□□□ -0.05
SHOX2O60902 C16orf62-215ENST00000542263 3138 ntTSL 2 BASIC14.71□□□□□ -0.05
SHOX2O60902 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC14.71□□□□□ -0.05
SHOX2O60902 RPS15A-213ENST00000576436 2190 ntTSL 4 BASIC14.71□□□□□ -0.05
SHOX2O60902 FAM120B-205ENST00000630384 3721 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
SHOX2O60902 MAMDC4-202ENST00000445819 3895 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
SHOX2O60902 GRIA4-210ENST00000527669 2647 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
SHOX2O60902 TRIM4-201ENST00000349062 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.06
SHOX2O60902 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.06
SHOX2O60902 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
SHOX2O60902 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC14.71□□□□□ -0.06
SHOX2O60902 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
SHOX2O60902 XRCC6-201ENST00000359308 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
SHOX2O60902 WTH3DI-201ENST00000623617 3032 ntAPPRIS P1 BASIC14.71□□□□□ -0.06
SHOX2O60902 MAN2C1-242ENST00000569482 3177 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
SHOX2O60902 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
SHOX2O60902 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SHOX2O60902 NRP1-202ENST00000374816 2804 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
SHOX2O60902 MAP7D2-204ENST00000452324 2233 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
SHOX2O60902 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC14.7□□□□□ -0.06
SHOX2O60902 IL9RP2-201ENST00000423948 1312 ntBASIC14.7□□□□□ -0.06
SHOX2O60902 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
SHOX2O60902 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SHOX2O60902 BX255923.2-202ENST00000620833 2874 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
SHOX2O60902 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SHOX2O60902 AC007326.2-201ENST00000624224 7579 ntBASIC14.7□□□□□ -0.06
SHOX2O60902 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SHOX2O60902 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SHOX2O60902 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
SHOX2O60902 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
SHOX2O60902 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
SHOX2O60902 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
SHOX2O60902 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
SHOX2O60902 LBH-204ENST00000406087 559 ntTSL 4 BASIC14.7□□□□□ -0.06
SHOX2O60902 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
SHOX2O60902 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC14.7□□□□□ -0.06
SHOX2O60902 TOMM22P5-201ENST00000416399 439 ntBASIC14.7□□□□□ -0.06
SHOX2O60902 TPM4P1-201ENST00000436100 807 ntBASIC14.7□□□□□ -0.06
SHOX2O60902 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC14.7□□□□□ -0.06
SHOX2O60902 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC14.7□□□□□ -0.06
SHOX2O60902 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
SHOX2O60902 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC14.7□□□□□ -0.06
SHOX2O60902 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC14.7□□□□□ -0.06
SHOX2O60902 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
SHOX2O60902 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SHOX2O60902 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms