Protein–RNA interactions for Protein: Q9H9S3

SEC61A2, Protein transport protein Sec61 subunit alpha isoform 2, humanhuman

Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEC61A2Q9H9S3 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SEC61A2Q9H9S3 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
SEC61A2Q9H9S3 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
SEC61A2Q9H9S3 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SEC61A2Q9H9S3 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
SEC61A2Q9H9S3 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SEC61A2Q9H9S3 TRIR-205ENST00000592273 783 ntTSL 3 BASIC20.31■□□□□ 0.84
SEC61A2Q9H9S3 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SEC61A2Q9H9S3 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
SEC61A2Q9H9S3 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC20.31■□□□□ 0.84
SEC61A2Q9H9S3 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SEC61A2Q9H9S3 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SEC61A2Q9H9S3 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SEC61A2Q9H9S3 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SEC61A2Q9H9S3 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SEC61A2Q9H9S3 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
SEC61A2Q9H9S3 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
SEC61A2Q9H9S3 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SEC61A2Q9H9S3 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
SEC61A2Q9H9S3 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC20.3■□□□□ 0.84
SEC61A2Q9H9S3 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SEC61A2Q9H9S3 AL161729.1-201ENST00000604104 1402 ntBASIC20.29■□□□□ 0.84
SEC61A2Q9H9S3 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC20.29■□□□□ 0.84
SEC61A2Q9H9S3 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SEC61A2Q9H9S3 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SEC61A2Q9H9S3 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SEC61A2Q9H9S3 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC20.29■□□□□ 0.84
SEC61A2Q9H9S3 AC239859.2-201ENST00000444165 318 ntBASIC20.29■□□□□ 0.84
SEC61A2Q9H9S3 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC20.29■□□□□ 0.84
SEC61A2Q9H9S3 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC20.29■□□□□ 0.84
SEC61A2Q9H9S3 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SEC61A2Q9H9S3 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
SEC61A2Q9H9S3 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SEC61A2Q9H9S3 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SEC61A2Q9H9S3 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SEC61A2Q9H9S3 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.28■□□□□ 0.84
SEC61A2Q9H9S3 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
SEC61A2Q9H9S3 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC20.28■□□□□ 0.84
SEC61A2Q9H9S3 STK32C-205ENST00000456004 607 ntTSL 2 BASIC20.28■□□□□ 0.84
SEC61A2Q9H9S3 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC20.28■□□□□ 0.84
SEC61A2Q9H9S3 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC20.28■□□□□ 0.84
SEC61A2Q9H9S3 CD37-213ENST00000598095 1598 ntTSL 2 BASIC20.28■□□□□ 0.84
SEC61A2Q9H9S3 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC20.28■□□□□ 0.84
SEC61A2Q9H9S3 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC20.27■□□□□ 0.84
SEC61A2Q9H9S3 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
SEC61A2Q9H9S3 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SEC61A2Q9H9S3 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SEC61A2Q9H9S3 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SEC61A2Q9H9S3 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SEC61A2Q9H9S3 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC20.27■□□□□ 0.84
SEC61A2Q9H9S3 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SEC61A2Q9H9S3 OR2A1-AS1-204ENST00000470435 602 ntBASIC20.27■□□□□ 0.84
SEC61A2Q9H9S3 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC20.27■□□□□ 0.84
SEC61A2Q9H9S3 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
SEC61A2Q9H9S3 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SEC61A2Q9H9S3 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SEC61A2Q9H9S3 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.26■□□□□ 0.83
SEC61A2Q9H9S3 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SEC61A2Q9H9S3 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC20.26■□□□□ 0.83
SEC61A2Q9H9S3 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SEC61A2Q9H9S3 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SEC61A2Q9H9S3 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
SEC61A2Q9H9S3 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
SEC61A2Q9H9S3 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SEC61A2Q9H9S3 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC20.25■□□□□ 0.83
SEC61A2Q9H9S3 LBH-205ENST00000407930 756 ntTSL 2 BASIC20.25■□□□□ 0.83
SEC61A2Q9H9S3 HES6-204ENST00000409182 863 ntTSL 2 BASIC20.25■□□□□ 0.83
SEC61A2Q9H9S3 AC137630.3-201ENST00000607245 391 ntBASIC20.25■□□□□ 0.83
SEC61A2Q9H9S3 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SEC61A2Q9H9S3 AC131274.2-201ENST00000580697 1507 ntBASIC20.25■□□□□ 0.83
SEC61A2Q9H9S3 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SEC61A2Q9H9S3 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
SEC61A2Q9H9S3 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SEC61A2Q9H9S3 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SEC61A2Q9H9S3 AF131216.4-201ENST00000638924 1588 ntBASIC20.25■□□□□ 0.83
SEC61A2Q9H9S3 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
SEC61A2Q9H9S3 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SEC61A2Q9H9S3 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
SEC61A2Q9H9S3 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
SEC61A2Q9H9S3 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC20.24■□□□□ 0.83
SEC61A2Q9H9S3 BX664725.1-201ENST00000438252 379 ntBASIC20.24■□□□□ 0.83
SEC61A2Q9H9S3 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC20.24■□□□□ 0.83
SEC61A2Q9H9S3 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC20.24■□□□□ 0.83
SEC61A2Q9H9S3 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC20.24■□□□□ 0.83
SEC61A2Q9H9S3 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SEC61A2Q9H9S3 GUSBP5-201ENST00000418136 578 ntBASIC20.23■□□□□ 0.83
SEC61A2Q9H9S3 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC20.23■□□□□ 0.83
SEC61A2Q9H9S3 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC20.23■□□□□ 0.83
SEC61A2Q9H9S3 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SEC61A2Q9H9S3 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SEC61A2Q9H9S3 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SEC61A2Q9H9S3 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC20.23■□□□□ 0.83
SEC61A2Q9H9S3 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
SEC61A2Q9H9S3 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SEC61A2Q9H9S3 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SEC61A2Q9H9S3 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
SEC61A2Q9H9S3 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SEC61A2Q9H9S3 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SEC61A2Q9H9S3 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SEC61A2Q9H9S3 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms