Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LIME1Q9H400 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC20■□□□□ 0.79
LIME1Q9H400 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LIME1Q9H400 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
LIME1Q9H400 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
LIME1Q9H400 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC19.99■□□□□ 0.79
LIME1Q9H400 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
LIME1Q9H400 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LIME1Q9H400 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LIME1Q9H400 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
LIME1Q9H400 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
LIME1Q9H400 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
LIME1Q9H400 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIME1Q9H400 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIME1Q9H400 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC19.98■□□□□ 0.79
LIME1Q9H400 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIME1Q9H400 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
LIME1Q9H400 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC19.98■□□□□ 0.79
LIME1Q9H400 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIME1Q9H400 PARL-206ENST00000435888 1098 ntTSL 5 BASIC19.98■□□□□ 0.79
LIME1Q9H400 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIME1Q9H400 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIME1Q9H400 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIME1Q9H400 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LIME1Q9H400 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LIME1Q9H400 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LIME1Q9H400 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LIME1Q9H400 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LIME1Q9H400 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LIME1Q9H400 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
LIME1Q9H400 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LIME1Q9H400 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC19.97■□□□□ 0.79
LIME1Q9H400 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
LIME1Q9H400 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
LIME1Q9H400 RARA-203ENST00000394086 2008 ntTSL 2 BASIC19.97■□□□□ 0.79
LIME1Q9H400 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC19.96■□□□□ 0.79
LIME1Q9H400 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LIME1Q9H400 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
LIME1Q9H400 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
LIME1Q9H400 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
LIME1Q9H400 RBM38-205ENST00000440234 686 ntTSL 2 BASIC19.96■□□□□ 0.79
LIME1Q9H400 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
LIME1Q9H400 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC19.95■□□□□ 0.79
LIME1Q9H400 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIME1Q9H400 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LIME1Q9H400 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIME1Q9H400 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
LIME1Q9H400 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LIME1Q9H400 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC19.95■□□□□ 0.78
LIME1Q9H400 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC19.95■□□□□ 0.78
LIME1Q9H400 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIME1Q9H400 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIME1Q9H400 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIME1Q9H400 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIME1Q9H400 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIME1Q9H400 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LIME1Q9H400 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LIME1Q9H400 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC19.94■□□□□ 0.78
LIME1Q9H400 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
LIME1Q9H400 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC19.94■□□□□ 0.78
LIME1Q9H400 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
LIME1Q9H400 GATM-206ENST00000558336 1522 ntTSL 2 BASIC19.94■□□□□ 0.78
LIME1Q9H400 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIME1Q9H400 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIME1Q9H400 MIR939-201ENST00000401314 82 ntBASIC19.94■□□□□ 0.78
LIME1Q9H400 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC19.94■□□□□ 0.78
LIME1Q9H400 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
LIME1Q9H400 AC087623.3-201ENST00000607047 1098 ntBASIC19.94■□□□□ 0.78
LIME1Q9H400 MIR6821-201ENST00000617625 74 ntBASIC19.94■□□□□ 0.78
LIME1Q9H400 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC19.94■□□□□ 0.78
LIME1Q9H400 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC19.94■□□□□ 0.78
LIME1Q9H400 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
LIME1Q9H400 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIME1Q9H400 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC19.93■□□□□ 0.78
LIME1Q9H400 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIME1Q9H400 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIME1Q9H400 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIME1Q9H400 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIME1Q9H400 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIME1Q9H400 AP001330.3-201ENST00000520123 633 ntBASIC19.93■□□□□ 0.78
LIME1Q9H400 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LIME1Q9H400 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIME1Q9H400 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIME1Q9H400 AC090877.2-201ENST00000558441 1738 ntBASIC19.93■□□□□ 0.78
LIME1Q9H400 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIME1Q9H400 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIME1Q9H400 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIME1Q9H400 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LIME1Q9H400 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LIME1Q9H400 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIME1Q9H400 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIME1Q9H400 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIME1Q9H400 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIME1Q9H400 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LIME1Q9H400 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LIME1Q9H400 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
LIME1Q9H400 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC19.91■□□□□ 0.78
LIME1Q9H400 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIME1Q9H400 LINC01124-201ENST00000409786 2117 ntBASIC19.91■□□□□ 0.78
LIME1Q9H400 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC19.91■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms