Protein–RNA interactions for Protein: Q9H1E3

NUCKS1, Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1, humanhuman

Known RBP Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUCKS1Q9H1E3 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC24.67■■□□□ 1.54
NUCKS1Q9H1E3 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC24.67■■□□□ 1.54
NUCKS1Q9H1E3 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC24.66■■□□□ 1.54
NUCKS1Q9H1E3 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC24.66■■□□□ 1.54
NUCKS1Q9H1E3 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
NUCKS1Q9H1E3 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC24.66■■□□□ 1.54
NUCKS1Q9H1E3 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC24.66■■□□□ 1.54
NUCKS1Q9H1E3 MTX2-204ENST00000443241 799 ntTSL 3 BASIC24.66■■□□□ 1.54
NUCKS1Q9H1E3 AC022616.5-201ENST00000518796 181 ntBASIC24.66■■□□□ 1.54
NUCKS1Q9H1E3 AC103834.1-201ENST00000520383 144 ntBASIC24.66■■□□□ 1.54
NUCKS1Q9H1E3 AC019171.1-201ENST00000601251 1056 ntBASIC24.66■■□□□ 1.54
NUCKS1Q9H1E3 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
NUCKS1Q9H1E3 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC24.66■■□□□ 1.54
NUCKS1Q9H1E3 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC24.66■■□□□ 1.54
NUCKS1Q9H1E3 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC24.66■■□□□ 1.54
NUCKS1Q9H1E3 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
NUCKS1Q9H1E3 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
NUCKS1Q9H1E3 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
NUCKS1Q9H1E3 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
NUCKS1Q9H1E3 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC24.65■■□□□ 1.54
NUCKS1Q9H1E3 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC24.65■■□□□ 1.54
NUCKS1Q9H1E3 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
NUCKS1Q9H1E3 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC24.65■■□□□ 1.54
NUCKS1Q9H1E3 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
NUCKS1Q9H1E3 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
NUCKS1Q9H1E3 STK32C-205ENST00000456004 607 ntTSL 2 BASIC24.64■■□□□ 1.54
NUCKS1Q9H1E3 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC24.64■■□□□ 1.54
NUCKS1Q9H1E3 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC24.64■■□□□ 1.54
NUCKS1Q9H1E3 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
NUCKS1Q9H1E3 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
NUCKS1Q9H1E3 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
NUCKS1Q9H1E3 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC24.63■■□□□ 1.53
NUCKS1Q9H1E3 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
NUCKS1Q9H1E3 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
NUCKS1Q9H1E3 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
NUCKS1Q9H1E3 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC24.63■■□□□ 1.53
NUCKS1Q9H1E3 DUSP8P3-201ENST00000399571 1760 ntBASIC24.62■■□□□ 1.53
NUCKS1Q9H1E3 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
NUCKS1Q9H1E3 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
NUCKS1Q9H1E3 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC24.62■■□□□ 1.53
NUCKS1Q9H1E3 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC24.62■■□□□ 1.53
NUCKS1Q9H1E3 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
NUCKS1Q9H1E3 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC24.62■■□□□ 1.53
NUCKS1Q9H1E3 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC24.62■■□□□ 1.53
NUCKS1Q9H1E3 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC24.61■■□□□ 1.53
NUCKS1Q9H1E3 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC24.61■■□□□ 1.53
NUCKS1Q9H1E3 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
NUCKS1Q9H1E3 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC24.61■■□□□ 1.53
NUCKS1Q9H1E3 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC24.61■■□□□ 1.53
NUCKS1Q9H1E3 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
NUCKS1Q9H1E3 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC24.61■■□□□ 1.53
NUCKS1Q9H1E3 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC24.61■■□□□ 1.53
NUCKS1Q9H1E3 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC24.6■■□□□ 1.53
NUCKS1Q9H1E3 C9orf163-202ENST00000624034 2573 ntBASIC24.6■■□□□ 1.53
NUCKS1Q9H1E3 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC24.6■■□□□ 1.53
NUCKS1Q9H1E3 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
NUCKS1Q9H1E3 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
NUCKS1Q9H1E3 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
NUCKS1Q9H1E3 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
NUCKS1Q9H1E3 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
NUCKS1Q9H1E3 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
NUCKS1Q9H1E3 AC079834.2-201ENST00000609776 1949 ntBASIC24.6■■□□□ 1.53
NUCKS1Q9H1E3 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
NUCKS1Q9H1E3 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC24.59■■□□□ 1.53
NUCKS1Q9H1E3 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
NUCKS1Q9H1E3 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
NUCKS1Q9H1E3 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC24.59■■□□□ 1.53
NUCKS1Q9H1E3 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC24.59■■□□□ 1.53
NUCKS1Q9H1E3 MIR4508-201ENST00000584178 70 ntBASIC24.59■■□□□ 1.53
NUCKS1Q9H1E3 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
NUCKS1Q9H1E3 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC24.59■■□□□ 1.53
NUCKS1Q9H1E3 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC24.59■■□□□ 1.53
NUCKS1Q9H1E3 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC24.59■■□□□ 1.53
NUCKS1Q9H1E3 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
NUCKS1Q9H1E3 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.53
NUCKS1Q9H1E3 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC24.58■■□□□ 1.53
NUCKS1Q9H1E3 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC24.58■■□□□ 1.53
NUCKS1Q9H1E3 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
NUCKS1Q9H1E3 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
NUCKS1Q9H1E3 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
NUCKS1Q9H1E3 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
NUCKS1Q9H1E3 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC24.58■■□□□ 1.52
NUCKS1Q9H1E3 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC24.58■■□□□ 1.52
NUCKS1Q9H1E3 AC131274.2-201ENST00000580697 1507 ntBASIC24.57■■□□□ 1.52
NUCKS1Q9H1E3 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC24.57■■□□□ 1.52
NUCKS1Q9H1E3 ALDH1A3-203ENST00000557963 1670 ntBASIC24.57■■□□□ 1.52
NUCKS1Q9H1E3 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC24.57■■□□□ 1.52
NUCKS1Q9H1E3 YBX1P4-201ENST00000392794 808 ntBASIC24.57■■□□□ 1.52
NUCKS1Q9H1E3 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC24.57■■□□□ 1.52
NUCKS1Q9H1E3 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
NUCKS1Q9H1E3 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
NUCKS1Q9H1E3 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC24.57■■□□□ 1.52
NUCKS1Q9H1E3 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC24.57■■□□□ 1.52
NUCKS1Q9H1E3 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
NUCKS1Q9H1E3 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC24.57■■□□□ 1.52
NUCKS1Q9H1E3 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
NUCKS1Q9H1E3 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
NUCKS1Q9H1E3 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
NUCKS1Q9H1E3 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC24.56■■□□□ 1.52
NUCKS1Q9H1E3 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC24.56■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms