Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CLRN1P58418 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
CLRN1P58418 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
CLRN1P58418 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
CLRN1P58418 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
CLRN1P58418 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
CLRN1P58418 ALDH1A3-203ENST00000557963 1670 ntBASIC20.29■□□□□ 0.84
CLRN1P58418 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CLRN1P58418 EI24-213ENST00000618552 1747 ntTSL 5 BASIC20.28■□□□□ 0.84
CLRN1P58418 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLRN1P58418 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLRN1P58418 AC004448.1-201ENST00000458332 883 ntBASIC20.28■□□□□ 0.84
CLRN1P58418 RARRES2P1-201ENST00000474487 481 ntBASIC20.28■□□□□ 0.84
CLRN1P58418 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
CLRN1P58418 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
CLRN1P58418 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC20.28■□□□□ 0.84
CLRN1P58418 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLRN1P58418 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC20.27■□□□□ 0.84
CLRN1P58418 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CLRN1P58418 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CLRN1P58418 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CLRN1P58418 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC20.27■□□□□ 0.84
CLRN1P58418 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC20.27■□□□□ 0.84
CLRN1P58418 BX664725.1-201ENST00000438252 379 ntBASIC20.27■□□□□ 0.84
CLRN1P58418 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC20.27■□□□□ 0.84
CLRN1P58418 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC20.27■□□□□ 0.84
CLRN1P58418 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC20.27■□□□□ 0.84
CLRN1P58418 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CLRN1P58418 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
CLRN1P58418 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CLRN1P58418 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC20.26■□□□□ 0.83
CLRN1P58418 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC20.26■□□□□ 0.83
CLRN1P58418 PRTG-204ENST00000561292 833 ntTSL 3 BASIC20.26■□□□□ 0.83
CLRN1P58418 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
CLRN1P58418 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC20.26■□□□□ 0.83
CLRN1P58418 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
CLRN1P58418 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CLRN1P58418 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CLRN1P58418 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CLRN1P58418 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC20.25■□□□□ 0.83
CLRN1P58418 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC20.25■□□□□ 0.83
CLRN1P58418 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CLRN1P58418 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CLRN1P58418 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CLRN1P58418 EI24-204ENST00000527235 1625 ntTSL 5 BASIC20.25■□□□□ 0.83
CLRN1P58418 TK2-202ENST00000417693 1046 ntTSL 2 BASIC20.25■□□□□ 0.83
CLRN1P58418 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC20.25■□□□□ 0.83
CLRN1P58418 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CLRN1P58418 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
CLRN1P58418 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLRN1P58418 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC20.24■□□□□ 0.83
CLRN1P58418 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC20.24■□□□□ 0.83
CLRN1P58418 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLRN1P58418 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
CLRN1P58418 RNF146-205ENST00000477776 762 ntTSL 3 BASIC20.24■□□□□ 0.83
CLRN1P58418 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLRN1P58418 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
CLRN1P58418 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC20.24■□□□□ 0.83
CLRN1P58418 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC20.24■□□□□ 0.83
CLRN1P58418 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLRN1P58418 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLRN1P58418 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLRN1P58418 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC20.24■□□□□ 0.83
CLRN1P58418 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLRN1P58418 RARA-203ENST00000394086 2008 ntTSL 2 BASIC20.24■□□□□ 0.83
CLRN1P58418 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLRN1P58418 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CLRN1P58418 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CLRN1P58418 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CLRN1P58418 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC20.23■□□□□ 0.83
CLRN1P58418 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CLRN1P58418 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CLRN1P58418 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
CLRN1P58418 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CLRN1P58418 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLRN1P58418 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLRN1P58418 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC20.22■□□□□ 0.83
CLRN1P58418 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLRN1P58418 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CLRN1P58418 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CLRN1P58418 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.22■□□□□ 0.83
CLRN1P58418 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLRN1P58418 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
CLRN1P58418 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CLRN1P58418 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLRN1P58418 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
CLRN1P58418 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
CLRN1P58418 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLRN1P58418 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLRN1P58418 KRT125P-201ENST00000546827 989 ntBASIC20.21■□□□□ 0.83
CLRN1P58418 SNX5-217ENST00000606557 1087 ntBASIC20.21■□□□□ 0.83
CLRN1P58418 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CLRN1P58418 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLRN1P58418 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC20.21■□□□□ 0.83
CLRN1P58418 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CLRN1P58418 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLRN1P58418 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLRN1P58418 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLRN1P58418 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLRN1P58418 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms