Protein–RNA interactions for Protein: P33552

CKS2, Cyclin-dependent kinases regulatory subunit 2, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS2P33552 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CKS2P33552 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CKS2P33552 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC16.72■□□□□ 0.27
CKS2P33552 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CKS2P33552 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
CKS2P33552 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC16.71■□□□□ 0.27
CKS2P33552 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CKS2P33552 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CKS2P33552 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CKS2P33552 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CKS2P33552 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
CKS2P33552 DUX4L13-201ENST00000554103 1267 ntBASIC16.71■□□□□ 0.27
CKS2P33552 DUX4L15-201ENST00000611059 1267 ntBASIC16.71■□□□□ 0.27
CKS2P33552 DUX4L23-201ENST00000615195 1269 ntBASIC16.71■□□□□ 0.27
CKS2P33552 DUX4L24-201ENST00000617576 1269 ntBASIC16.71■□□□□ 0.27
CKS2P33552 DUX4L22-201ENST00000618238 1269 ntBASIC16.71■□□□□ 0.27
CKS2P33552 DUX4L20-201ENST00000619712 1269 ntBASIC16.71■□□□□ 0.27
CKS2P33552 DUX4L21-201ENST00000622058 1269 ntBASIC16.71■□□□□ 0.27
CKS2P33552 DUX4L10-201ENST00000622460 1267 ntBASIC16.71■□□□□ 0.27
CKS2P33552 DUX4L25-201ENST00000624915 1269 ntBASIC16.71■□□□□ 0.27
CKS2P33552 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
CKS2P33552 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
CKS2P33552 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
CKS2P33552 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC16.7■□□□□ 0.26
CKS2P33552 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC16.7■□□□□ 0.26
CKS2P33552 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CKS2P33552 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CKS2P33552 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
CKS2P33552 USP48-205ENST00000421625 2818 ntTSL 2 BASIC16.7■□□□□ 0.26
CKS2P33552 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CKS2P33552 TERT-206ENST00000508104 2486 ntTSL 5 BASIC16.7■□□□□ 0.26
CKS2P33552 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CKS2P33552 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
CKS2P33552 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC16.7■□□□□ 0.26
CKS2P33552 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CKS2P33552 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
CKS2P33552 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CKS2P33552 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CKS2P33552 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CKS2P33552 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CKS2P33552 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC16.69■□□□□ 0.26
CKS2P33552 DUSP8P3-201ENST00000399571 1760 ntBASIC16.69■□□□□ 0.26
CKS2P33552 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CKS2P33552 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CKS2P33552 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
CKS2P33552 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CKS2P33552 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CKS2P33552 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CKS2P33552 MED25-210ENST00000612854 801 ntTSL 5 BASIC16.69■□□□□ 0.26
CKS2P33552 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CKS2P33552 MED25-214ENST00000622402 642 ntTSL 5 BASIC16.69■□□□□ 0.26
CKS2P33552 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CKS2P33552 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
CKS2P33552 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC16.69■□□□□ 0.26
CKS2P33552 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CKS2P33552 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC16.69■□□□□ 0.26
CKS2P33552 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CKS2P33552 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CKS2P33552 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CKS2P33552 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CKS2P33552 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC16.68■□□□□ 0.26
CKS2P33552 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CKS2P33552 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
CKS2P33552 LINC01971-201ENST00000617888 1048 ntBASIC16.68■□□□□ 0.26
CKS2P33552 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
CKS2P33552 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CKS2P33552 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC16.68■□□□□ 0.26
CKS2P33552 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CKS2P33552 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CKS2P33552 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC16.68■□□□□ 0.26
CKS2P33552 WWC2-AS2-201ENST00000578387 2183 ntBASIC16.68■□□□□ 0.26
CKS2P33552 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC16.68■□□□□ 0.26
CKS2P33552 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CKS2P33552 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CKS2P33552 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CKS2P33552 ECEL1P1-201ENST00000373592 1742 ntBASIC16.67■□□□□ 0.26
CKS2P33552 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CKS2P33552 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CKS2P33552 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CKS2P33552 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CKS2P33552 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CKS2P33552 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CKS2P33552 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
CKS2P33552 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC16.67■□□□□ 0.26
CKS2P33552 AC092068.2-201ENST00000590491 1708 ntBASIC16.67■□□□□ 0.26
CKS2P33552 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
CKS2P33552 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CKS2P33552 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CKS2P33552 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
CKS2P33552 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CKS2P33552 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CKS2P33552 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
CKS2P33552 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CKS2P33552 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
CKS2P33552 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CKS2P33552 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CKS2P33552 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CKS2P33552 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CKS2P33552 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CKS2P33552 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 14.8 ms