Protein–RNA interactions for Protein: P0CW20

LIMS4, LIM and senescent cell antigen-like-containing domain protein 4, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4P0CW20 ECEL1P1-201ENST00000373592 1742 ntBASIC20.3■□□□□ 0.84
LIMS4P0CW20 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIMS4P0CW20 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIMS4P0CW20 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIMS4P0CW20 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIMS4P0CW20 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20.29■□□□□ 0.84
LIMS4P0CW20 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIMS4P0CW20 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIMS4P0CW20 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIMS4P0CW20 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIMS4P0CW20 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIMS4P0CW20 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC20.29■□□□□ 0.84
LIMS4P0CW20 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIMS4P0CW20 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC20.29■□□□□ 0.84
LIMS4P0CW20 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
LIMS4P0CW20 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIMS4P0CW20 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC20.29■□□□□ 0.84
LIMS4P0CW20 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIMS4P0CW20 SRP68-213ENST00000629930 165 ntTSL 5 BASIC20.29■□□□□ 0.84
LIMS4P0CW20 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIMS4P0CW20 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIMS4P0CW20 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIMS4P0CW20 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIMS4P0CW20 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC20.29■□□□□ 0.84
LIMS4P0CW20 AC127496.7-201ENST00000625110 1798 ntBASIC20.29■□□□□ 0.84
LIMS4P0CW20 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
LIMS4P0CW20 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LIMS4P0CW20 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
LIMS4P0CW20 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LIMS4P0CW20 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
LIMS4P0CW20 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
LIMS4P0CW20 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LIMS4P0CW20 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LIMS4P0CW20 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
LIMS4P0CW20 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
LIMS4P0CW20 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LIMS4P0CW20 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LIMS4P0CW20 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LIMS4P0CW20 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LIMS4P0CW20 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC20.27■□□□□ 0.84
LIMS4P0CW20 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIMS4P0CW20 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIMS4P0CW20 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIMS4P0CW20 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LIMS4P0CW20 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC20.27■□□□□ 0.84
LIMS4P0CW20 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.84
LIMS4P0CW20 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
LIMS4P0CW20 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIMS4P0CW20 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
LIMS4P0CW20 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
LIMS4P0CW20 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
LIMS4P0CW20 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LIMS4P0CW20 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LIMS4P0CW20 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC20.26■□□□□ 0.83
LIMS4P0CW20 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
LIMS4P0CW20 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
LIMS4P0CW20 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LIMS4P0CW20 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LIMS4P0CW20 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LIMS4P0CW20 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIMS4P0CW20 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
LIMS4P0CW20 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIMS4P0CW20 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIMS4P0CW20 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIMS4P0CW20 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIMS4P0CW20 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIMS4P0CW20 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC20.25■□□□□ 0.83
LIMS4P0CW20 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIMS4P0CW20 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LIMS4P0CW20 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LIMS4P0CW20 AC137767.1-201ENST00000602918 1920 ntBASIC20.25■□□□□ 0.83
LIMS4P0CW20 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIMS4P0CW20 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIMS4P0CW20 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.25■□□□□ 0.83
LIMS4P0CW20 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LIMS4P0CW20 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC20.24■□□□□ 0.83
LIMS4P0CW20 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LIMS4P0CW20 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
LIMS4P0CW20 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LIMS4P0CW20 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC20.24■□□□□ 0.83
LIMS4P0CW20 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.24■□□□□ 0.83
LIMS4P0CW20 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
LIMS4P0CW20 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LIMS4P0CW20 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
LIMS4P0CW20 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LIMS4P0CW20 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LIMS4P0CW20 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
LIMS4P0CW20 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LIMS4P0CW20 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
LIMS4P0CW20 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC20.23■□□□□ 0.83
LIMS4P0CW20 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LIMS4P0CW20 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LIMS4P0CW20 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LIMS4P0CW20 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.22■□□□□ 0.83
LIMS4P0CW20 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LIMS4P0CW20 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.22■□□□□ 0.83
LIMS4P0CW20 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LIMS4P0CW20 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LIMS4P0CW20 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.22■□□□□ 0.83
LIMS4P0CW20 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms