Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC26.92■■□□□ 1.9
HMGB1P09429 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
HMGB1P09429 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC26.92■■□□□ 1.9
HMGB1P09429 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC26.92■■□□□ 1.9
HMGB1P09429 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC26.92■■□□□ 1.9
HMGB1P09429 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC26.92■■□□□ 1.9
HMGB1P09429 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
HMGB1P09429 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC26.91■■□□□ 1.9
HMGB1P09429 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
HMGB1P09429 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
HMGB1P09429 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC26.91■■□□□ 1.9
HMGB1P09429 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
HMGB1P09429 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC26.91■■□□□ 1.9
HMGB1P09429 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC26.91■■□□□ 1.9
HMGB1P09429 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC26.91■■□□□ 1.9
HMGB1P09429 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
HMGB1P09429 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
HMGB1P09429 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC26.9■■□□□ 1.9
HMGB1P09429 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC26.9■■□□□ 1.9
HMGB1P09429 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
HMGB1P09429 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC26.9■■□□□ 1.9
HMGB1P09429 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
HMGB1P09429 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
HMGB1P09429 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC26.89■■□□□ 1.9
HMGB1P09429 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC26.89■■□□□ 1.9
HMGB1P09429 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC26.89■■□□□ 1.9
HMGB1P09429 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC26.89■■□□□ 1.89
HMGB1P09429 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
HMGB1P09429 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
HMGB1P09429 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
HMGB1P09429 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
HMGB1P09429 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC26.88■■□□□ 1.89
HMGB1P09429 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC26.88■■□□□ 1.89
HMGB1P09429 DUSP8P5-201ENST00000422884 1815 ntBASIC26.88■■□□□ 1.89
HMGB1P09429 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
HMGB1P09429 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
HMGB1P09429 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
HMGB1P09429 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC26.87■■□□□ 1.89
HMGB1P09429 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC26.87■■□□□ 1.89
HMGB1P09429 KRT125P-201ENST00000546827 989 ntBASIC26.87■■□□□ 1.89
HMGB1P09429 MIR6722-201ENST00000617286 78 ntBASIC26.87■■□□□ 1.89
HMGB1P09429 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
HMGB1P09429 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC26.87■■□□□ 1.89
HMGB1P09429 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC26.87■■□□□ 1.89
HMGB1P09429 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC26.87■■□□□ 1.89
HMGB1P09429 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC26.86■■□□□ 1.89
HMGB1P09429 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC26.86■■□□□ 1.89
HMGB1P09429 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
HMGB1P09429 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
HMGB1P09429 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC26.86■■□□□ 1.89
HMGB1P09429 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC26.86■■□□□ 1.89
HMGB1P09429 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC26.86■■□□□ 1.89
HMGB1P09429 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC26.86■■□□□ 1.89
HMGB1P09429 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
HMGB1P09429 REST-206ENST00000612429 1376 ntTSL 5 BASIC26.85■■□□□ 1.89
HMGB1P09429 REST-207ENST00000616975 1370 ntTSL 5 BASIC26.85■■□□□ 1.89
HMGB1P09429 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
HMGB1P09429 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC26.85■■□□□ 1.89
HMGB1P09429 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC26.85■■□□□ 1.89
HMGB1P09429 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC26.85■■□□□ 1.89
HMGB1P09429 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC26.85■■□□□ 1.89
HMGB1P09429 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC26.85■■□□□ 1.89
HMGB1P09429 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC26.85■■□□□ 1.89
HMGB1P09429 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC26.85■■□□□ 1.89
HMGB1P09429 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC26.85■■□□□ 1.89
HMGB1P09429 CLTA-210ENST00000540080 989 ntTSL 2 BASIC26.85■■□□□ 1.89
HMGB1P09429 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
HMGB1P09429 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
HMGB1P09429 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC26.85■■□□□ 1.89
HMGB1P09429 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
HMGB1P09429 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC26.85■■□□□ 1.89
HMGB1P09429 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
HMGB1P09429 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC26.84■■□□□ 1.89
HMGB1P09429 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC26.84■■□□□ 1.89
HMGB1P09429 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC26.84■■□□□ 1.89
HMGB1P09429 ANOS2P-203ENST00000472227 1816 ntBASIC26.84■■□□□ 1.89
HMGB1P09429 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC26.84■■□□□ 1.89
HMGB1P09429 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
HMGB1P09429 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC26.84■■□□□ 1.89
HMGB1P09429 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC26.84■■□□□ 1.89
HMGB1P09429 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
HMGB1P09429 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
HMGB1P09429 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC26.84■■□□□ 1.89
HMGB1P09429 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
HMGB1P09429 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC26.84■■□□□ 1.89
HMGB1P09429 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC26.83■■□□□ 1.89
HMGB1P09429 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC26.83■■□□□ 1.89
HMGB1P09429 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC26.83■■□□□ 1.89
HMGB1P09429 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC26.83■■□□□ 1.89
HMGB1P09429 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC26.83■■□□□ 1.89
HMGB1P09429 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC26.83■■□□□ 1.89
HMGB1P09429 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
HMGB1P09429 AC092068.2-201ENST00000590491 1708 ntBASIC26.83■■□□□ 1.89
HMGB1P09429 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC26.83■■□□□ 1.89
HMGB1P09429 AC009299.2-201ENST00000482477 511 ntBASIC26.83■■□□□ 1.89
HMGB1P09429 AC092028.1-203ENST00000608262 953 ntBASIC26.83■■□□□ 1.89
HMGB1P09429 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC26.83■■□□□ 1.89
HMGB1P09429 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.88
HMGB1P09429 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
HMGB1P09429 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms