Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
COL4A2P08572 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC23.34■■□□□ 1.33
COL4A2P08572 AC009086.3-201ENST00000623486 1008 ntBASIC23.34■■□□□ 1.33
COL4A2P08572 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC23.34■■□□□ 1.33
COL4A2P08572 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
COL4A2P08572 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
COL4A2P08572 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
COL4A2P08572 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC23.33■■□□□ 1.33
COL4A2P08572 MPST-208ENST00000628507 698 ntTSL 5 BASIC23.33■■□□□ 1.33
COL4A2P08572 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
COL4A2P08572 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
COL4A2P08572 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
COL4A2P08572 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC23.33■■□□□ 1.32
COL4A2P08572 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
COL4A2P08572 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC23.33■■□□□ 1.32
COL4A2P08572 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
COL4A2P08572 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
COL4A2P08572 AC090192.1-201ENST00000517740 490 ntBASIC23.32■■□□□ 1.32
COL4A2P08572 USF2-207ENST00000595068 1612 ntTSL 5 BASIC23.32■■□□□ 1.32
COL4A2P08572 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC23.31■■□□□ 1.32
COL4A2P08572 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
COL4A2P08572 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
COL4A2P08572 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC23.31■■□□□ 1.32
COL4A2P08572 MIR3181-201ENST00000578512 73 ntBASIC23.31■■□□□ 1.32
COL4A2P08572 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC23.31■■□□□ 1.32
COL4A2P08572 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC23.31■■□□□ 1.32
COL4A2P08572 DUSP8P4-201ENST00000399538 1761 ntBASIC23.31■■□□□ 1.32
COL4A2P08572 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC23.31■■□□□ 1.32
COL4A2P08572 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
COL4A2P08572 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
COL4A2P08572 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
COL4A2P08572 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
COL4A2P08572 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
COL4A2P08572 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
COL4A2P08572 VGF-203ENST00000611537 1622 ntTSL 5 BASIC23.3■■□□□ 1.32
COL4A2P08572 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
COL4A2P08572 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC23.3■■□□□ 1.32
COL4A2P08572 AK1-201ENST00000223836 736 ntTSL 3 BASIC23.3■■□□□ 1.32
COL4A2P08572 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC23.3■■□□□ 1.32
COL4A2P08572 DUX4L2-201ENST00000561772 1275 ntBASIC23.3■■□□□ 1.32
COL4A2P08572 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC23.3■■□□□ 1.32
COL4A2P08572 DUX4L6-201ENST00000626483 1275 ntBASIC23.3■■□□□ 1.32
COL4A2P08572 DUX4L1-201ENST00000627662 1275 ntBASIC23.3■■□□□ 1.32
COL4A2P08572 DUX4L8-201ENST00000629013 1275 ntBASIC23.3■■□□□ 1.32
COL4A2P08572 DUX4L3-201ENST00000630187 1275 ntBASIC23.3■■□□□ 1.32
COL4A2P08572 DUX4L7-201ENST00000630678 1275 ntBASIC23.3■■□□□ 1.32
COL4A2P08572 DUX4L5-201ENST00000630834 1275 ntBASIC23.3■■□□□ 1.32
COL4A2P08572 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC23.3■■□□□ 1.32
COL4A2P08572 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC23.3■■□□□ 1.32
COL4A2P08572 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.32
COL4A2P08572 AL121749.1-202ENST00000609313 2153 ntBASIC23.29■■□□□ 1.32
COL4A2P08572 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC23.29■■□□□ 1.32
COL4A2P08572 ASB1-202ENST00000409297 878 ntTSL 5 BASIC23.29■■□□□ 1.32
COL4A2P08572 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC23.29■■□□□ 1.32
COL4A2P08572 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
COL4A2P08572 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC23.29■■□□□ 1.32
COL4A2P08572 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
COL4A2P08572 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
COL4A2P08572 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC23.28■■□□□ 1.32
COL4A2P08572 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
COL4A2P08572 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC23.28■■□□□ 1.32
COL4A2P08572 AC092437.1-201ENST00000624794 1048 ntBASIC23.28■■□□□ 1.32
COL4A2P08572 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC23.28■■□□□ 1.32
COL4A2P08572 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
COL4A2P08572 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
COL4A2P08572 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
COL4A2P08572 LSR-205ENST00000427250 1606 ntTSL 2 BASIC23.28■■□□□ 1.32
COL4A2P08572 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
COL4A2P08572 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC23.28■■□□□ 1.32
COL4A2P08572 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC23.28■■□□□ 1.32
COL4A2P08572 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
COL4A2P08572 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC23.27■■□□□ 1.32
COL4A2P08572 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
COL4A2P08572 GTSE1-AS1-202ENST00000623117 1518 ntBASIC23.27■■□□□ 1.32
COL4A2P08572 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC23.27■■□□□ 1.32
COL4A2P08572 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
COL4A2P08572 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
COL4A2P08572 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC23.27■■□□□ 1.32
COL4A2P08572 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC23.27■■□□□ 1.31
COL4A2P08572 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
COL4A2P08572 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
COL4A2P08572 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC23.26■■□□□ 1.31
COL4A2P08572 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC23.26■■□□□ 1.31
COL4A2P08572 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
COL4A2P08572 GLI3-203ENST00000437480 451 ntTSL 2 BASIC23.25■■□□□ 1.31
COL4A2P08572 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
COL4A2P08572 AC012414.1-201ENST00000556676 535 ntBASIC23.25■■□□□ 1.31
COL4A2P08572 RARRES2P11-201ENST00000635158 484 ntBASIC23.25■■□□□ 1.31
COL4A2P08572 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
COL4A2P08572 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
COL4A2P08572 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC23.25■■□□□ 1.31
COL4A2P08572 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
COL4A2P08572 GRAMD4P2-201ENST00000423297 1097 ntBASIC23.25■■□□□ 1.31
COL4A2P08572 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC23.25■■□□□ 1.31
COL4A2P08572 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC23.25■■□□□ 1.31
COL4A2P08572 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
COL4A2P08572 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL4A2P08572 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
COL4A2P08572 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
COL4A2P08572 YBX1P1-201ENST00000445822 960 ntBASIC23.24■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms