Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NKX2-2O95096 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC21.1■□□□□ 0.97
NKX2-2O95096 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NKX2-2O95096 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NKX2-2O95096 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC21.09■□□□□ 0.97
NKX2-2O95096 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NKX2-2O95096 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
NKX2-2O95096 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NKX2-2O95096 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC21.09■□□□□ 0.97
NKX2-2O95096 CLTA-210ENST00000540080 989 ntTSL 2 BASIC21.09■□□□□ 0.97
NKX2-2O95096 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
NKX2-2O95096 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC21.09■□□□□ 0.97
NKX2-2O95096 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.09■□□□□ 0.97
NKX2-2O95096 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
NKX2-2O95096 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
NKX2-2O95096 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
NKX2-2O95096 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC21.08■□□□□ 0.97
NKX2-2O95096 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
NKX2-2O95096 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
NKX2-2O95096 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC21.08■□□□□ 0.97
NKX2-2O95096 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
NKX2-2O95096 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
NKX2-2O95096 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
NKX2-2O95096 AC092028.1-203ENST00000608262 953 ntBASIC21.08■□□□□ 0.97
NKX2-2O95096 MIR6722-201ENST00000617286 78 ntBASIC21.08■□□□□ 0.97
NKX2-2O95096 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.08■□□□□ 0.97
NKX2-2O95096 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
NKX2-2O95096 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC21.08■□□□□ 0.96
NKX2-2O95096 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NKX2-2O95096 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
NKX2-2O95096 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
NKX2-2O95096 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NKX2-2O95096 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC21.07■□□□□ 0.96
NKX2-2O95096 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC21.07■□□□□ 0.96
NKX2-2O95096 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NKX2-2O95096 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
NKX2-2O95096 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
NKX2-2O95096 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NKX2-2O95096 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC21.07■□□□□ 0.96
NKX2-2O95096 AC239859.2-201ENST00000444165 318 ntBASIC21.07■□□□□ 0.96
NKX2-2O95096 MIR4787-201ENST00000607364 84 ntBASIC21.07■□□□□ 0.96
NKX2-2O95096 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.07■□□□□ 0.96
NKX2-2O95096 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
NKX2-2O95096 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
NKX2-2O95096 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
NKX2-2O95096 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
NKX2-2O95096 RARA-203ENST00000394086 2008 ntTSL 2 BASIC21.06■□□□□ 0.96
NKX2-2O95096 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
NKX2-2O95096 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC21.06■□□□□ 0.96
NKX2-2O95096 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NKX2-2O95096 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.06■□□□□ 0.96
NKX2-2O95096 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.06■□□□□ 0.96
NKX2-2O95096 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
NKX2-2O95096 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
NKX2-2O95096 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
NKX2-2O95096 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NKX2-2O95096 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
NKX2-2O95096 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NKX2-2O95096 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NKX2-2O95096 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NKX2-2O95096 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.05■□□□□ 0.96
NKX2-2O95096 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
NKX2-2O95096 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
NKX2-2O95096 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
NKX2-2O95096 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC21.04■□□□□ 0.96
NKX2-2O95096 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
NKX2-2O95096 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
NKX2-2O95096 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NKX2-2O95096 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC21.04■□□□□ 0.96
NKX2-2O95096 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC21.04■□□□□ 0.96
NKX2-2O95096 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
NKX2-2O95096 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
NKX2-2O95096 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NKX2-2O95096 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NKX2-2O95096 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
NKX2-2O95096 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC21.03■□□□□ 0.96
NKX2-2O95096 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
NKX2-2O95096 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
NKX2-2O95096 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NKX2-2O95096 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
NKX2-2O95096 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
NKX2-2O95096 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
NKX2-2O95096 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
NKX2-2O95096 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
NKX2-2O95096 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.02■□□□□ 0.96
NKX2-2O95096 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
NKX2-2O95096 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
NKX2-2O95096 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
NKX2-2O95096 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
NKX2-2O95096 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
NKX2-2O95096 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC21.02■□□□□ 0.96
NKX2-2O95096 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
NKX2-2O95096 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
NKX2-2O95096 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NKX2-2O95096 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NKX2-2O95096 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC21.01■□□□□ 0.95
NKX2-2O95096 CLTA-206ENST00000466396 695 ntTSL 2 BASIC21.01■□□□□ 0.95
NKX2-2O95096 AL035685.1-201ENST00000636663 812 ntBASIC21.01■□□□□ 0.95
NKX2-2O95096 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
NKX2-2O95096 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 70.2 ms