Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
CBX4O00257 AC141586.4-201ENST00000624558 1573 ntBASIC23.31■■□□□ 1.32
CBX4O00257 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
CBX4O00257 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC23.3■■□□□ 1.32
CBX4O00257 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CBX4O00257 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC23.3■■□□□ 1.32
CBX4O00257 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CBX4O00257 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC23.3■■□□□ 1.32
CBX4O00257 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC23.3■■□□□ 1.32
CBX4O00257 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
CBX4O00257 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC23.3■■□□□ 1.32
CBX4O00257 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CBX4O00257 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC23.3■■□□□ 1.32
CBX4O00257 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CBX4O00257 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CBX4O00257 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC23.29■■□□□ 1.32
CBX4O00257 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC23.29■■□□□ 1.32
CBX4O00257 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC23.29■■□□□ 1.32
CBX4O00257 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC23.29■■□□□ 1.32
CBX4O00257 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
CBX4O00257 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC23.29■■□□□ 1.32
CBX4O00257 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CBX4O00257 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC23.28■■□□□ 1.32
CBX4O00257 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CBX4O00257 PREB-202ENST00000406567 1910 ntTSL 5 BASIC23.28■■□□□ 1.32
CBX4O00257 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CBX4O00257 MIR638-201ENST00000385237 100 ntBASIC23.28■■□□□ 1.32
CBX4O00257 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC23.28■■□□□ 1.32
CBX4O00257 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC23.28■■□□□ 1.32
CBX4O00257 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC23.28■■□□□ 1.32
CBX4O00257 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
CBX4O00257 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC23.27■■□□□ 1.32
CBX4O00257 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC23.27■■□□□ 1.32
CBX4O00257 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC23.27■■□□□ 1.32
CBX4O00257 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC23.27■■□□□ 1.32
CBX4O00257 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
CBX4O00257 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
CBX4O00257 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
CBX4O00257 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC23.27■■□□□ 1.32
CBX4O00257 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC23.27■■□□□ 1.32
CBX4O00257 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC23.27■■□□□ 1.31
CBX4O00257 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC23.27■■□□□ 1.31
CBX4O00257 EI24-204ENST00000527235 1625 ntTSL 5 BASIC23.26■■□□□ 1.31
CBX4O00257 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CBX4O00257 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC23.26■■□□□ 1.31
CBX4O00257 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CBX4O00257 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CBX4O00257 AC131281.2-201ENST00000520478 145 ntBASIC23.26■■□□□ 1.31
CBX4O00257 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CBX4O00257 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CBX4O00257 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CBX4O00257 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC23.25■■□□□ 1.31
CBX4O00257 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC23.25■■□□□ 1.31
CBX4O00257 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC23.25■■□□□ 1.31
CBX4O00257 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
CBX4O00257 AC004812.2-201ENST00000611079 2094 ntBASIC23.25■■□□□ 1.31
CBX4O00257 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
CBX4O00257 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CBX4O00257 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
CBX4O00257 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC23.25■■□□□ 1.31
CBX4O00257 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
CBX4O00257 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CBX4O00257 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC23.24■■□□□ 1.31
CBX4O00257 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CBX4O00257 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC23.24■■□□□ 1.31
CBX4O00257 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CBX4O00257 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CBX4O00257 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC23.24■■□□□ 1.31
CBX4O00257 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CBX4O00257 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC23.24■■□□□ 1.31
CBX4O00257 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
CBX4O00257 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
CBX4O00257 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC23.24■■□□□ 1.31
CBX4O00257 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CBX4O00257 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC23.23■■□□□ 1.31
CBX4O00257 SHD-204ENST00000599689 1729 ntTSL 5 BASIC23.23■■□□□ 1.31
CBX4O00257 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
CBX4O00257 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC23.23■■□□□ 1.31
CBX4O00257 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC23.23■■□□□ 1.31
CBX4O00257 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC23.23■■□□□ 1.31
CBX4O00257 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
CBX4O00257 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC23.23■■□□□ 1.31
CBX4O00257 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC23.23■■□□□ 1.31
CBX4O00257 RASSF1-AS1-201ENST00000629828 790 ntBASIC23.23■■□□□ 1.31
CBX4O00257 RALB-208ENST00000631312 311 ntTSL 5 BASIC23.23■■□□□ 1.31
CBX4O00257 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC23.23■■□□□ 1.31
CBX4O00257 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CBX4O00257 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC23.23■■□□□ 1.31
CBX4O00257 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CBX4O00257 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC23.23■■□□□ 1.31
CBX4O00257 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CBX4O00257 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CBX4O00257 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC23.22■■□□□ 1.31
CBX4O00257 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CBX4O00257 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CBX4O00257 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CBX4O00257 NALT1-201ENST00000429224 738 ntTSL 5 BASIC23.22■■□□□ 1.31
CBX4O00257 QDPR-206ENST00000508623 601 ntTSL 3 BASIC23.22■■□□□ 1.31
CBX4O00257 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
CBX4O00257 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms