Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 EI24-213ENST00000618552 1747 ntTSL 5 BASIC17.86■□□□□ 0.45
TRAV1-1A0A0B4J248 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRAV1-1A0A0B4J248 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRAV1-1A0A0B4J248 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
TRAV1-1A0A0B4J248 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC17.86■□□□□ 0.45
TRAV1-1A0A0B4J248 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRAV1-1A0A0B4J248 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRAV1-1A0A0B4J248 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
TRAV1-1A0A0B4J248 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRAV1-1A0A0B4J248 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRAV1-1A0A0B4J248 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRAV1-1A0A0B4J248 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC17.85■□□□□ 0.45
TRAV1-1A0A0B4J248 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRAV1-1A0A0B4J248 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRAV1-1A0A0B4J248 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
TRAV1-1A0A0B4J248 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
TRAV1-1A0A0B4J248 C11orf96-202ENST00000528572 1834 ntBASIC17.84■□□□□ 0.45
TRAV1-1A0A0B4J248 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
TRAV1-1A0A0B4J248 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
TRAV1-1A0A0B4J248 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC17.84■□□□□ 0.45
TRAV1-1A0A0B4J248 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
TRAV1-1A0A0B4J248 CHST11-203ENST00000547956 936 ntTSL 2 BASIC17.84■□□□□ 0.45
TRAV1-1A0A0B4J248 CHML-204ENST00000638121 920 ntTSL 2 BASIC17.84■□□□□ 0.45
TRAV1-1A0A0B4J248 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRAV1-1A0A0B4J248 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC17.84■□□□□ 0.45
TRAV1-1A0A0B4J248 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRAV1-1A0A0B4J248 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
TRAV1-1A0A0B4J248 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
TRAV1-1A0A0B4J248 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
TRAV1-1A0A0B4J248 COMT-203ENST00000403184 2217 ntTSL 2 BASIC17.83■□□□□ 0.45
TRAV1-1A0A0B4J248 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC17.83■□□□□ 0.45
TRAV1-1A0A0B4J248 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC17.83■□□□□ 0.45
TRAV1-1A0A0B4J248 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
TRAV1-1A0A0B4J248 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRAV1-1A0A0B4J248 MED25-210ENST00000612854 801 ntTSL 5 BASIC17.83■□□□□ 0.44
TRAV1-1A0A0B4J248 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
TRAV1-1A0A0B4J248 MED25-214ENST00000622402 642 ntTSL 5 BASIC17.83■□□□□ 0.44
TRAV1-1A0A0B4J248 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC17.83■□□□□ 0.44
TRAV1-1A0A0B4J248 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
TRAV1-1A0A0B4J248 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
TRAV1-1A0A0B4J248 AL121603.2-201ENST00000557373 2117 ntBASIC17.83■□□□□ 0.44
TRAV1-1A0A0B4J248 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV1-1A0A0B4J248 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC17.82■□□□□ 0.44
TRAV1-1A0A0B4J248 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC17.82■□□□□ 0.44
TRAV1-1A0A0B4J248 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
TRAV1-1A0A0B4J248 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV1-1A0A0B4J248 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC17.82■□□□□ 0.44
TRAV1-1A0A0B4J248 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV1-1A0A0B4J248 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC17.82■□□□□ 0.44
TRAV1-1A0A0B4J248 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV1-1A0A0B4J248 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC17.82■□□□□ 0.44
TRAV1-1A0A0B4J248 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
TRAV1-1A0A0B4J248 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV1-1A0A0B4J248 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV1-1A0A0B4J248 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV1-1A0A0B4J248 AC092053.2-201ENST00000640557 1818 ntBASIC17.82■□□□□ 0.44
TRAV1-1A0A0B4J248 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC17.81■□□□□ 0.44
TRAV1-1A0A0B4J248 AL161729.1-201ENST00000604104 1402 ntBASIC17.81■□□□□ 0.44
TRAV1-1A0A0B4J248 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
TRAV1-1A0A0B4J248 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
TRAV1-1A0A0B4J248 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV1-1A0A0B4J248 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV1-1A0A0B4J248 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC17.81■□□□□ 0.44
TRAV1-1A0A0B4J248 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC17.81■□□□□ 0.44
TRAV1-1A0A0B4J248 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC17.81■□□□□ 0.44
TRAV1-1A0A0B4J248 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV1-1A0A0B4J248 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV1-1A0A0B4J248 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV1-1A0A0B4J248 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV1-1A0A0B4J248 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC17.8■□□□□ 0.44
TRAV1-1A0A0B4J248 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
TRAV1-1A0A0B4J248 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV1-1A0A0B4J248 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
TRAV1-1A0A0B4J248 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV1-1A0A0B4J248 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV1-1A0A0B4J248 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV1-1A0A0B4J248 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV1-1A0A0B4J248 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV1-1A0A0B4J248 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV1-1A0A0B4J248 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRAV1-1A0A0B4J248 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRAV1-1A0A0B4J248 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC17.79■□□□□ 0.44
TRAV1-1A0A0B4J248 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRAV1-1A0A0B4J248 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TRAV1-1A0A0B4J248 AC021231.2-201ENST00000594613 730 ntBASIC17.79■□□□□ 0.44
TRAV1-1A0A0B4J248 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRAV1-1A0A0B4J248 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRAV1-1A0A0B4J248 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRAV1-1A0A0B4J248 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRAV1-1A0A0B4J248 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC17.79■□□□□ 0.44
TRAV1-1A0A0B4J248 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC17.79■□□□□ 0.44
TRAV1-1A0A0B4J248 H19-210ENST00000439725 1929 ntTSL 2 BASIC17.78■□□□□ 0.44
TRAV1-1A0A0B4J248 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV1-1A0A0B4J248 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC17.78■□□□□ 0.44
TRAV1-1A0A0B4J248 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV1-1A0A0B4J248 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC17.78■□□□□ 0.44
TRAV1-1A0A0B4J248 AC139530.1-201ENST00000575312 1977 ntBASIC17.78■□□□□ 0.44
TRAV1-1A0A0B4J248 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC17.78■□□□□ 0.44
TRAV1-1A0A0B4J248 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV1-1A0A0B4J248 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms