Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
TRAV3A0A0B4J244 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
TRAV3A0A0B4J244 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
TRAV3A0A0B4J244 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
TRAV3A0A0B4J244 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRAV3A0A0B4J244 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC18.33■□□□□ 0.52
TRAV3A0A0B4J244 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC18.33■□□□□ 0.52
TRAV3A0A0B4J244 NTF6A-201ENST00000591175 560 ntBASIC18.33■□□□□ 0.52
TRAV3A0A0B4J244 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRAV3A0A0B4J244 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC18.33■□□□□ 0.52
TRAV3A0A0B4J244 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TRAV3A0A0B4J244 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC18.33■□□□□ 0.52
TRAV3A0A0B4J244 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC18.33■□□□□ 0.52
TRAV3A0A0B4J244 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.52
TRAV3A0A0B4J244 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
TRAV3A0A0B4J244 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TRAV3A0A0B4J244 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC18.32■□□□□ 0.52
TRAV3A0A0B4J244 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRAV3A0A0B4J244 AC011551.1-201ENST00000614101 683 ntBASIC18.32■□□□□ 0.52
TRAV3A0A0B4J244 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC18.32■□□□□ 0.52
TRAV3A0A0B4J244 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
TRAV3A0A0B4J244 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
TRAV3A0A0B4J244 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRAV3A0A0B4J244 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRAV3A0A0B4J244 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV3A0A0B4J244 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV3A0A0B4J244 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV3A0A0B4J244 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV3A0A0B4J244 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV3A0A0B4J244 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV3A0A0B4J244 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC18.31■□□□□ 0.52
TRAV3A0A0B4J244 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC18.31■□□□□ 0.52
TRAV3A0A0B4J244 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV3A0A0B4J244 H19-210ENST00000439725 1929 ntTSL 2 BASIC18.31■□□□□ 0.52
TRAV3A0A0B4J244 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC18.31■□□□□ 0.52
TRAV3A0A0B4J244 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC18.3■□□□□ 0.52
TRAV3A0A0B4J244 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV3A0A0B4J244 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC18.3■□□□□ 0.52
TRAV3A0A0B4J244 AC092068.2-201ENST00000590491 1708 ntBASIC18.3■□□□□ 0.52
TRAV3A0A0B4J244 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV3A0A0B4J244 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
TRAV3A0A0B4J244 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV3A0A0B4J244 GAK-223ENST00000628912 497 ntTSL 5 BASIC18.3■□□□□ 0.52
TRAV3A0A0B4J244 EI24-204ENST00000527235 1625 ntTSL 5 BASIC18.3■□□□□ 0.52
TRAV3A0A0B4J244 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV3A0A0B4J244 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV3A0A0B4J244 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
TRAV3A0A0B4J244 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC18.3■□□□□ 0.52
TRAV3A0A0B4J244 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV3A0A0B4J244 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV3A0A0B4J244 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV3A0A0B4J244 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC18.29■□□□□ 0.52
TRAV3A0A0B4J244 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV3A0A0B4J244 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
TRAV3A0A0B4J244 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC18.29■□□□□ 0.52
TRAV3A0A0B4J244 AC019171.1-201ENST00000601251 1056 ntBASIC18.29■□□□□ 0.52
TRAV3A0A0B4J244 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
TRAV3A0A0B4J244 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
TRAV3A0A0B4J244 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TRAV3A0A0B4J244 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
TRAV3A0A0B4J244 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAV3A0A0B4J244 DUSP8P3-201ENST00000399571 1760 ntBASIC18.28■□□□□ 0.52
TRAV3A0A0B4J244 AC004987.1-201ENST00000428627 508 ntBASIC18.28■□□□□ 0.52
TRAV3A0A0B4J244 MTX2-204ENST00000443241 799 ntTSL 3 BASIC18.28■□□□□ 0.52
TRAV3A0A0B4J244 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC18.28■□□□□ 0.52
TRAV3A0A0B4J244 BHLHE23-202ENST00000612929 1109 ntBASIC18.28■□□□□ 0.52
TRAV3A0A0B4J244 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAV3A0A0B4J244 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAV3A0A0B4J244 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC18.28■□□□□ 0.52
TRAV3A0A0B4J244 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAV3A0A0B4J244 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAV3A0A0B4J244 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRAV3A0A0B4J244 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRAV3A0A0B4J244 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC18.27■□□□□ 0.52
TRAV3A0A0B4J244 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRAV3A0A0B4J244 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC18.27■□□□□ 0.52
TRAV3A0A0B4J244 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
TRAV3A0A0B4J244 PVT1_1.1-201ENST00000615125 194 ntBASIC18.27■□□□□ 0.52
TRAV3A0A0B4J244 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
TRAV3A0A0B4J244 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
TRAV3A0A0B4J244 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
TRAV3A0A0B4J244 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
TRAV3A0A0B4J244 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
TRAV3A0A0B4J244 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
TRAV3A0A0B4J244 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
TRAV3A0A0B4J244 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TRAV3A0A0B4J244 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRAV3A0A0B4J244 ALDH1A3-203ENST00000557963 1670 ntBASIC18.26■□□□□ 0.51
TRAV3A0A0B4J244 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
TRAV3A0A0B4J244 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TRAV3A0A0B4J244 ATP5G2P3-201ENST00000429083 425 ntBASIC18.26■□□□□ 0.51
TRAV3A0A0B4J244 AC022616.5-201ENST00000518796 181 ntBASIC18.26■□□□□ 0.51
TRAV3A0A0B4J244 AC120024.1-201ENST00000562672 995 ntBASIC18.26■□□□□ 0.51
TRAV3A0A0B4J244 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC18.26■□□□□ 0.51
TRAV3A0A0B4J244 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
TRAV3A0A0B4J244 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRAV3A0A0B4J244 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRAV3A0A0B4J244 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRAV3A0A0B4J244 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRAV3A0A0B4J244 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms