Protein–RNA interactions for Protein: Q9Y2J0

RPH3A, Rabphilin-3A, humanhuman

Predicted RBP Predictions only

Length 694 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPH3AQ9Y2J0 LINC01271-201ENST00000441214 2250 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 AC020910.5-201ENST00000623668 1865 ntBASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 AC106881.1-201ENST00000605849 3329 ntBASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 IRS1-201ENST00000305123 9705 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 RDX-218ENST00000544551 4117 ntTSL 2 BASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 CICP24-201ENST00000605464 2705 ntBASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 SNX21-203ENST00000372541 771 ntTSL 2 BASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 TPO-206ENST00000382269 1155 ntTSL 5 BASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 CD8B2-202ENST00000417670 633 ntBASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 PFN2-215ENST00000497148 743 ntTSL 4 BASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 COX5BP1-201ENST00000507622 393 ntBASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 AP006547.1-201ENST00000563435 692 ntBASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 MIR4741-201ENST00000579822 90 ntBASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 MIR3615-201ENST00000581999 87 ntBASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 PRDM16-201ENST00000270722 8690 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 INE2-201ENST00000630399 1874 ntBASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 AL031728.1-201ENST00000449034 2479 ntTSL 3 BASIC13.61□□□□□ -0.23
RPH3AQ9Y2J0 AC073869.1-201ENST00000415574 2762 ntBASIC13.6□□□□□ -0.23
RPH3AQ9Y2J0 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RPH3AQ9Y2J0 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RPH3AQ9Y2J0 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC13.6□□□□□ -0.23
RPH3AQ9Y2J0 INTS4P1-203ENST00000641008 3683 ntBASIC13.6□□□□□ -0.23
RPH3AQ9Y2J0 MPP6-202ENST00000396475 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RPH3AQ9Y2J0 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
RPH3AQ9Y2J0 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
RPH3AQ9Y2J0 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC13.6□□□□□ -0.23
RPH3AQ9Y2J0 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
RPH3AQ9Y2J0 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
RPH3AQ9Y2J0 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
RPH3AQ9Y2J0 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RPH3AQ9Y2J0 CNTNAP3P2-201ENST00000617175 3861 ntBASIC13.6□□□□□ -0.23
RPH3AQ9Y2J0 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RPH3AQ9Y2J0 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
RPH3AQ9Y2J0 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
RPH3AQ9Y2J0 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RPH3AQ9Y2J0 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
RPH3AQ9Y2J0 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RPH3AQ9Y2J0 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
RPH3AQ9Y2J0 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC13.6□□□□□ -0.23
RPH3AQ9Y2J0 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RPH3AQ9Y2J0 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RPH3AQ9Y2J0 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RPH3AQ9Y2J0 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RPH3AQ9Y2J0 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC13.6□□□□□ -0.23
RPH3AQ9Y2J0 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
RPH3AQ9Y2J0 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC13.6□□□□□ -0.23
RPH3AQ9Y2J0 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RPH3AQ9Y2J0 OLR1-203ENST00000432556 950 ntTSL 2 BASIC13.6□□□□□ -0.23
RPH3AQ9Y2J0 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC13.6□□□□□ -0.23
RPH3AQ9Y2J0 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 96.9 ms