Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 LINC00892-203ENST00000454385 686 ntTSL 3 BASIC18.87■□□□□ 0.61
USP54Q70EL1 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC18.87■□□□□ 0.61
USP54Q70EL1 CD44-224ENST00000526669 870 ntTSL 5 BASIC18.87■□□□□ 0.61
USP54Q70EL1 ETV2-207ENST00000619399 994 ntTSL 5 BASIC18.87■□□□□ 0.61
USP54Q70EL1 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP54Q70EL1 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
USP54Q70EL1 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC18.87■□□□□ 0.61
USP54Q70EL1 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
USP54Q70EL1 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP54Q70EL1 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
USP54Q70EL1 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP54Q70EL1 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP54Q70EL1 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC18.87■□□□□ 0.61
USP54Q70EL1 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC18.87■□□□□ 0.61
USP54Q70EL1 TMEM145-203ENST00000598766 2011 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
USP54Q70EL1 AL390755.1-201ENST00000623716 2027 ntBASIC18.86■□□□□ 0.61
USP54Q70EL1 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
USP54Q70EL1 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
USP54Q70EL1 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
USP54Q70EL1 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
USP54Q70EL1 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP54Q70EL1 EPPIN-201ENST00000336443 1217 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
USP54Q70EL1 AC106827.1-201ENST00000366454 431 ntBASIC18.86■□□□□ 0.61
USP54Q70EL1 COA6-203ENST00000366615 710 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
USP54Q70EL1 IFNLR1-204ENST00000374419 953 ntTSL 5 BASIC18.86■□□□□ 0.61
USP54Q70EL1 CALCA-205ENST00000486207 851 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
USP54Q70EL1 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC18.86■□□□□ 0.61
USP54Q70EL1 AC026120.2-201ENST00000617239 309 ntBASIC18.86■□□□□ 0.61
USP54Q70EL1 AC126755.5-201ENST00000622756 267 ntBASIC18.86■□□□□ 0.61
USP54Q70EL1 ADK-205ENST00000539909 1866 ntTSL 2 BASIC18.86■□□□□ 0.61
USP54Q70EL1 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP54Q70EL1 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP54Q70EL1 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP54Q70EL1 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP54Q70EL1 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP54Q70EL1 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP54Q70EL1 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
USP54Q70EL1 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC18.86■□□□□ 0.61
USP54Q70EL1 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP54Q70EL1 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
USP54Q70EL1 DEDD-202ENST00000368006 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP54Q70EL1 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
USP54Q70EL1 YPEL4-201ENST00000300022 1721 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP54Q70EL1 ERLIN1-202ENST00000407654 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP54Q70EL1 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
USP54Q70EL1 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
USP54Q70EL1 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP54Q70EL1 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP54Q70EL1 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC18.86■□□□□ 0.61
USP54Q70EL1 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP54Q70EL1 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP54Q70EL1 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP54Q70EL1 INSC-205ENST00000525218 1576 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
USP54Q70EL1 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC18.86■□□□□ 0.61
USP54Q70EL1 OR7E115P-201ENST00000382617 1024 ntBASIC18.85■□□□□ 0.61
USP54Q70EL1 AC006372.2-201ENST00000433660 292 ntTSL 3 BASIC18.85■□□□□ 0.61
USP54Q70EL1 AL020996.1-201ENST00000442055 435 ntTSL 2 BASIC18.85■□□□□ 0.61
USP54Q70EL1 AL451000.1-201ENST00000451300 1186 ntBASIC18.85■□□□□ 0.61
USP54Q70EL1 RN7SL128P-201ENST00000467883 305 ntBASIC18.85■□□□□ 0.61
USP54Q70EL1 RN7SL375P-201ENST00000492442 298 ntBASIC18.85■□□□□ 0.61
USP54Q70EL1 FAM86B3P-203ENST00000523992 854 ntBASIC18.85■□□□□ 0.61
USP54Q70EL1 ANAPC15-217ENST00000545944 704 ntAPPRIS P3 TSL 3 BASIC18.85■□□□□ 0.61
USP54Q70EL1 AL359219.1-201ENST00000556311 934 ntBASIC18.85■□□□□ 0.61
USP54Q70EL1 ATP2A1-AS1-201ENST00000561547 558 ntTSL 2 BASIC18.85■□□□□ 0.61
USP54Q70EL1 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
USP54Q70EL1 AC010127.1-202ENST00000597623 713 ntTSL 2 BASIC18.85■□□□□ 0.61
USP54Q70EL1 ADAMTS9-AS1-216ENST00000626280 882 ntTSL 5 BASIC18.85■□□□□ 0.61
USP54Q70EL1 AL139424.3-202ENST00000641619 917 ntBASIC18.85■□□□□ 0.61
USP54Q70EL1 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
USP54Q70EL1 AL590824.1-201ENST00000403828 1349 ntBASIC18.85■□□□□ 0.61
USP54Q70EL1 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
USP54Q70EL1 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USP54Q70EL1 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
USP54Q70EL1 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC18.85■□□□□ 0.61
USP54Q70EL1 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC18.85■□□□□ 0.61
USP54Q70EL1 AC005906.2-205ENST00000640862 1522 ntTSL 5 BASIC18.85■□□□□ 0.61
USP54Q70EL1 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USP54Q70EL1 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USP54Q70EL1 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC18.85■□□□□ 0.61
USP54Q70EL1 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC18.85■□□□□ 0.61
USP54Q70EL1 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USP54Q70EL1 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
USP54Q70EL1 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC18.85■□□□□ 0.61
USP54Q70EL1 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USP54Q70EL1 FAM21EP-201ENST00000417804 985 ntBASIC18.85■□□□□ 0.61
USP54Q70EL1 ZMIZ1-AS1-202ENST00000440151 814 ntTSL 3 BASIC18.85■□□□□ 0.61
USP54Q70EL1 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC18.85■□□□□ 0.61
USP54Q70EL1 AC011995.2-201ENST00000452701 574 ntTSL 4 BASIC18.85■□□□□ 0.61
USP54Q70EL1 EHF-208ENST00000530286 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USP54Q70EL1 NAV2-AS2-201ENST00000533767 782 ntTSL 2 BASIC18.85■□□□□ 0.61
USP54Q70EL1 AC012158.2-201ENST00000536546 354 ntBASIC18.85■□□□□ 0.61
USP54Q70EL1 AC009779.3-204ENST00000549424 367 ntTSL 3 BASIC18.85■□□□□ 0.61
USP54Q70EL1 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC18.85■□□□□ 0.61
USP54Q70EL1 TUBB6-214ENST00000592683 481 ntTSL 4 BASIC18.85■□□□□ 0.61
USP54Q70EL1 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USP54Q70EL1 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USP54Q70EL1 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
USP54Q70EL1 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USP54Q70EL1 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP54Q70EL1 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms