Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
ZNF549Q6P9A3 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC14.63□□□□□ -0.07
ZNF549Q6P9A3 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
ZNF549Q6P9A3 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
ZNF549Q6P9A3 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
ZNF549Q6P9A3 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC14.63□□□□□ -0.07
ZNF549Q6P9A3 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC14.63□□□□□ -0.07
ZNF549Q6P9A3 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
ZNF549Q6P9A3 AC020910.6-201ENST00000623084 1459 ntBASIC14.63□□□□□ -0.07
ZNF549Q6P9A3 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
ZNF549Q6P9A3 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
ZNF549Q6P9A3 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
ZNF549Q6P9A3 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC14.62□□□□□ -0.07
ZNF549Q6P9A3 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
ZNF549Q6P9A3 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
ZNF549Q6P9A3 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
ZNF549Q6P9A3 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
ZNF549Q6P9A3 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
ZNF549Q6P9A3 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
ZNF549Q6P9A3 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC14.62□□□□□ -0.07
ZNF549Q6P9A3 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC14.62□□□□□ -0.07
ZNF549Q6P9A3 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
ZNF549Q6P9A3 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
ZNF549Q6P9A3 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
ZNF549Q6P9A3 AC007551.1-201ENST00000457394 519 ntBASIC14.62□□□□□ -0.07
ZNF549Q6P9A3 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
ZNF549Q6P9A3 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC14.62□□□□□ -0.07
ZNF549Q6P9A3 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC14.62□□□□□ -0.07
ZNF549Q6P9A3 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC14.62□□□□□ -0.07
ZNF549Q6P9A3 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC14.62□□□□□ -0.07
ZNF549Q6P9A3 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC14.62□□□□□ -0.07
ZNF549Q6P9A3 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC14.62□□□□□ -0.07
ZNF549Q6P9A3 MIR6074-201ENST00000612054 107 ntBASIC14.62□□□□□ -0.07
ZNF549Q6P9A3 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
ZNF549Q6P9A3 AC006453.4-201ENST00000636949 1252 ntBASIC14.62□□□□□ -0.07
ZNF549Q6P9A3 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC14.62□□□□□ -0.07
ZNF549Q6P9A3 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
ZNF549Q6P9A3 ST20-AS1-201ENST00000560255 4223 ntBASIC14.62□□□□□ -0.07
ZNF549Q6P9A3 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC14.62□□□□□ -0.07
ZNF549Q6P9A3 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
ZNF549Q6P9A3 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC14.62□□□□□ -0.07
ZNF549Q6P9A3 ANKRD30BP2-201ENST00000435744 1610 ntBASIC14.62□□□□□ -0.07
ZNF549Q6P9A3 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
ZNF549Q6P9A3 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
ZNF549Q6P9A3 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
ZNF549Q6P9A3 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
ZNF549Q6P9A3 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
ZNF549Q6P9A3 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
ZNF549Q6P9A3 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
ZNF549Q6P9A3 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 CD8B2-202ENST00000417670 633 ntBASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 RPL8-205ENST00000527914 551 ntTSL 3 BASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 RPL28-206ENST00000558752 671 ntTSL 3 BASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 AC073413.1-201ENST00000603927 732 ntBASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 CECR7-204ENST00000609932 568 ntTSL 2 BASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 AL358472.5-202ENST00000641448 1267 ntBASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 AC105233.6-201ENST00000642093 218 ntBASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
ZNF549Q6P9A3 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms