Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
SRP54P61011 PARN-202ENST00000420015 2360 ntTSL 2 BASIC14.56□□□□□ -0.08
SRP54P61011 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
SRP54P61011 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SRP54P61011 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SRP54P61011 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
SRP54P61011 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SRP54P61011 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SRP54P61011 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
SRP54P61011 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SRP54P61011 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SRP54P61011 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SRP54P61011 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
SRP54P61011 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
SRP54P61011 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC14.56□□□□□ -0.08
SRP54P61011 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SRP54P61011 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC14.56□□□□□ -0.08
SRP54P61011 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SRP54P61011 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SRP54P61011 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC14.56□□□□□ -0.08
SRP54P61011 API5-203ENST00000455725 2257 ntTSL 2 BASIC14.56□□□□□ -0.08
SRP54P61011 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SRP54P61011 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
SRP54P61011 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
SRP54P61011 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SRP54P61011 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC14.56□□□□□ -0.08
SRP54P61011 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SRP54P61011 AL662890.1-201ENST00000396818 632 ntBASIC14.56□□□□□ -0.08
SRP54P61011 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SRP54P61011 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC14.56□□□□□ -0.08
SRP54P61011 KLF2P1-201ENST00000447438 1042 ntBASIC14.56□□□□□ -0.08
SRP54P61011 SPTLC1P5-201ENST00000450718 252 ntBASIC14.56□□□□□ -0.08
SRP54P61011 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC14.56□□□□□ -0.08
SRP54P61011 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC14.56□□□□□ -0.08
SRP54P61011 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
SRP54P61011 CICP12-201ENST00000455801 843 ntBASIC14.56□□□□□ -0.08
SRP54P61011 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC14.56□□□□□ -0.08
SRP54P61011 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC14.56□□□□□ -0.08
SRP54P61011 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC14.56□□□□□ -0.08
SRP54P61011 CSH2-206ENST00000560142 749 ntTSL 5 BASIC14.56□□□□□ -0.08
SRP54P61011 SYT17-208ENST00000568433 812 ntTSL 3 BASIC14.56□□□□□ -0.08
SRP54P61011 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SRP54P61011 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC14.56□□□□□ -0.08
SRP54P61011 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SRP54P61011 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SRP54P61011 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SRP54P61011 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
SRP54P61011 AC009884.2-201ENST00000603110 324 ntBASIC14.56□□□□□ -0.08
SRP54P61011 AL645939.5-201ENST00000606834 243 ntBASIC14.56□□□□□ -0.08
SRP54P61011 AC090164.2-201ENST00000611487 516 ntBASIC14.56□□□□□ -0.08
SRP54P61011 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC14.56□□□□□ -0.08
SRP54P61011 AC091544.8-201ENST00000619490 361 ntBASIC14.56□□□□□ -0.08
SRP54P61011 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC14.56□□□□□ -0.08
SRP54P61011 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SRP54P61011 AL008718.2-201ENST00000609206 1313 ntBASIC14.56□□□□□ -0.08
SRP54P61011 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC14.56□□□□□ -0.08
SRP54P61011 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SRP54P61011 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC14.56□□□□□ -0.08
SRP54P61011 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SRP54P61011 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SRP54P61011 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SRP54P61011 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SRP54P61011 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SRP54P61011 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
SRP54P61011 USP31-203ENST00000567975 2142 ntTSL 2 BASIC14.56□□□□□ -0.08
SRP54P61011 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
SRP54P61011 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC14.56□□□□□ -0.08
SRP54P61011 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SRP54P61011 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SRP54P61011 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SRP54P61011 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SRP54P61011 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SRP54P61011 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC14.55□□□□□ -0.08
SRP54P61011 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SRP54P61011 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC14.55□□□□□ -0.08
SRP54P61011 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SRP54P61011 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SRP54P61011 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC14.55□□□□□ -0.08
SRP54P61011 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SRP54P61011 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
SRP54P61011 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SRP54P61011 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SRP54P61011 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
SRP54P61011 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
SRP54P61011 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SRP54P61011 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SRP54P61011 LINC01101-201ENST00000622953 1884 ntBASIC14.55□□□□□ -0.08
SRP54P61011 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
SRP54P61011 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SRP54P61011 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC14.55□□□□□ -0.08
SRP54P61011 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
SRP54P61011 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SRP54P61011 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC14.55□□□□□ -0.08
SRP54P61011 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC14.55□□□□□ -0.08
SRP54P61011 AL035414.1-201ENST00000451327 857 ntBASIC14.55□□□□□ -0.08
SRP54P61011 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SRP54P61011 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC14.55□□□□□ -0.08
SRP54P61011 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC14.55□□□□□ -0.08
SRP54P61011 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC14.55□□□□□ -0.08
SRP54P61011 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms