Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
LIM2P55344 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
LIM2P55344 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC13.98□□□□□ -0.17
LIM2P55344 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
LIM2P55344 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
LIM2P55344 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LIM2P55344 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
LIM2P55344 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
LIM2P55344 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
LIM2P55344 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
LIM2P55344 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
LIM2P55344 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LIM2P55344 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC13.98□□□□□ -0.17
LIM2P55344 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
LIM2P55344 F10-203ENST00000409306 1450 ntTSL 3 BASIC13.98□□□□□ -0.17
LIM2P55344 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
LIM2P55344 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC13.98□□□□□ -0.17
LIM2P55344 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
LIM2P55344 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
LIM2P55344 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LIM2P55344 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC13.98□□□□□ -0.17
LIM2P55344 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LIM2P55344 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LIM2P55344 OS9-207ENST00000439210 1946 ntTSL 2 BASIC13.98□□□□□ -0.17
LIM2P55344 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LIM2P55344 AC139712.1-201ENST00000378256 1875 ntBASIC13.97□□□□□ -0.17
LIM2P55344 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC13.97□□□□□ -0.17
LIM2P55344 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
LIM2P55344 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC13.97□□□□□ -0.17
LIM2P55344 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
LIM2P55344 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
LIM2P55344 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC13.97□□□□□ -0.17
LIM2P55344 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LIM2P55344 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC13.97□□□□□ -0.17
LIM2P55344 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC13.97□□□□□ -0.17
LIM2P55344 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
LIM2P55344 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
LIM2P55344 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
LIM2P55344 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LIM2P55344 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LIM2P55344 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LIM2P55344 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
LIM2P55344 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC13.97□□□□□ -0.17
LIM2P55344 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
LIM2P55344 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
LIM2P55344 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LIM2P55344 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
LIM2P55344 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
LIM2P55344 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
LIM2P55344 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LIM2P55344 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
LIM2P55344 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
LIM2P55344 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
LIM2P55344 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC13.97□□□□□ -0.17
LIM2P55344 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC13.97□□□□□ -0.17
LIM2P55344 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
LIM2P55344 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC13.97□□□□□ -0.17
LIM2P55344 AC010328.2-201ENST00000597698 1111 ntBASIC13.97□□□□□ -0.17
LIM2P55344 AL359881.2-201ENST00000602973 570 ntBASIC13.97□□□□□ -0.17
LIM2P55344 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC13.97□□□□□ -0.17
LIM2P55344 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC13.97□□□□□ -0.17
LIM2P55344 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LIM2P55344 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC13.97□□□□□ -0.17
LIM2P55344 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
LIM2P55344 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC13.97□□□□□ -0.17
LIM2P55344 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LIM2P55344 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC13.97□□□□□ -0.17
LIM2P55344 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
LIM2P55344 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
LIM2P55344 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC13.97□□□□□ -0.17
LIM2P55344 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC13.97□□□□□ -0.17
LIM2P55344 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC13.97□□□□□ -0.17
LIM2P55344 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
LIM2P55344 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
LIM2P55344 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
LIM2P55344 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
LIM2P55344 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LIM2P55344 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
LIM2P55344 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC13.96□□□□□ -0.17
LIM2P55344 MVK-214ENST00000629016 1591 ntTSL 5 BASIC13.96□□□□□ -0.17
LIM2P55344 AL590440.2-201ENST00000641973 1595 ntBASIC13.96□□□□□ -0.17
LIM2P55344 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
LIM2P55344 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC13.96□□□□□ -0.17
LIM2P55344 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LIM2P55344 SHC1P1-201ENST00000425230 1745 ntBASIC13.96□□□□□ -0.17
LIM2P55344 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
LIM2P55344 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC13.96□□□□□ -0.17
LIM2P55344 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC13.96□□□□□ -0.17
LIM2P55344 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC13.96□□□□□ -0.17
LIM2P55344 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LIM2P55344 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LIM2P55344 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LIM2P55344 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
LIM2P55344 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
LIM2P55344 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
LIM2P55344 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LIM2P55344 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC13.96□□□□□ -0.17
LIM2P55344 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC13.96□□□□□ -0.17
LIM2P55344 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LIM2P55344 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC13.96□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 207.2 ms