Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC15.29■□□□□ 0.04
COL4A4P53420 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC15.29■□□□□ 0.04
COL4A4P53420 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL4A4P53420 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL4A4P53420 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL4A4P53420 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL4A4P53420 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL4A4P53420 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC15.29■□□□□ 0.04
COL4A4P53420 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL4A4P53420 MC5R-201ENST00000324750 1319 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
COL4A4P53420 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC15.29■□□□□ 0.04
COL4A4P53420 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC15.29■□□□□ 0.04
COL4A4P53420 EFHD1-207ENST00000611312 1490 ntTSL 5 BASIC15.28■□□□□ 0.04
COL4A4P53420 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL4A4P53420 OTOS-201ENST00000319460 566 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
COL4A4P53420 WASIR1-201ENST00000399966 1054 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL4A4P53420 HTATIP2-202ENST00000421577 886 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
COL4A4P53420 EHMT2-AS1-201ENST00000434689 373 ntTSL 3 BASIC15.28■□□□□ 0.04
COL4A4P53420 AC098934.1-203ENST00000442868 1262 ntBASIC15.28■□□□□ 0.04
COL4A4P53420 AC063952.3-201ENST00000467756 308 ntBASIC15.28■□□□□ 0.04
COL4A4P53420 KLF3-AS1-203ENST00000504219 627 ntTSL 3 BASIC15.28■□□□□ 0.04
COL4A4P53420 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC15.28■□□□□ 0.04
COL4A4P53420 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC15.28■□□□□ 0.04
COL4A4P53420 POLR2E-204ENST00000586746 1096 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
COL4A4P53420 BLACE-202ENST00000616210 540 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
COL4A4P53420 LINC00244-201ENST00000625073 613 ntBASIC15.28■□□□□ 0.04
COL4A4P53420 OSMR-AS1-204ENST00000636516 850 ntTSL 5 BASIC15.28■□□□□ 0.04
COL4A4P53420 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC15.28■□□□□ 0.04
COL4A4P53420 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL4A4P53420 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL4A4P53420 UBOX5-AS1-201ENST00000446537 1792 ntTSL 2 BASIC15.28■□□□□ 0.04
COL4A4P53420 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC15.28■□□□□ 0.04
COL4A4P53420 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL4A4P53420 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL4A4P53420 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
COL4A4P53420 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL4A4P53420 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC15.28■□□□□ 0.04
COL4A4P53420 PSMC4-202ENST00000455878 1333 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL4A4P53420 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC15.28■□□□□ 0.04
COL4A4P53420 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL4A4P53420 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL4A4P53420 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL4A4P53420 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
COL4A4P53420 WARS-203ENST00000358655 2466 ntTSL 2 BASIC15.28■□□□□ 0.04
COL4A4P53420 IFNLR1-204ENST00000374419 953 ntTSL 5 BASIC15.28■□□□□ 0.04
COL4A4P53420 EIF4E2-205ENST00000409394 604 ntTSL 3 BASIC15.28■□□□□ 0.04
COL4A4P53420 NAA60-205ENST00000424546 1149 ntTSL 2 BASIC15.28■□□□□ 0.04
COL4A4P53420 LINC01278-201ENST00000433061 529 ntTSL 3 BASIC15.28■□□□□ 0.04
COL4A4P53420 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC15.28■□□□□ 0.04
COL4A4P53420 IGKV1D-43-201ENST00000468879 532 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
COL4A4P53420 LINC02171-201ENST00000508619 1033 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL4A4P53420 F11R-204ENST00000537746 1245 ntTSL 2 BASIC15.28■□□□□ 0.04
COL4A4P53420 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC15.28■□□□□ 0.04
COL4A4P53420 SORD2P-201ENST00000558556 1069 ntBASIC15.28■□□□□ 0.04
COL4A4P53420 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL4A4P53420 APOC1-209ENST00000592885 562 ntTSL 3 BASIC15.28■□□□□ 0.04
COL4A4P53420 LINC01278-206ENST00000610088 554 ntTSL 4 BASIC15.28■□□□□ 0.04
COL4A4P53420 AC090510.3-201ENST00000615831 821 ntBASIC15.28■□□□□ 0.04
COL4A4P53420 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC15.28■□□□□ 0.04
COL4A4P53420 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL4A4P53420 FAM168A-202ENST00000356467 1767 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL4A4P53420 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL4A4P53420 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL4A4P53420 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC15.28■□□□□ 0.04
COL4A4P53420 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
COL4A4P53420 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC15.28■□□□□ 0.04
COL4A4P53420 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL4A4P53420 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL4A4P53420 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL4A4P53420 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL4A4P53420 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL4A4P53420 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC15.27■□□□□ 0.04
COL4A4P53420 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL4A4P53420 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL4A4P53420 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC15.27■□□□□ 0.04
COL4A4P53420 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL4A4P53420 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
COL4A4P53420 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL4A4P53420 PLA2G2A-202ENST00000400520 974 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
COL4A4P53420 JAZF1-AS1-201ENST00000436758 548 ntTSL 2 BASIC15.27■□□□□ 0.03
COL4A4P53420 GH2-203ENST00000449787 753 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
COL4A4P53420 AC122719.1-201ENST00000507989 559 ntTSL 4 BASIC15.27■□□□□ 0.03
COL4A4P53420 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC15.27■□□□□ 0.03
COL4A4P53420 AC092862.1-201ENST00000541534 533 ntBASIC15.27■□□□□ 0.03
COL4A4P53420 C11orf97-201ENST00000542198 701 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
COL4A4P53420 VENTXP3-201ENST00000546480 773 ntBASIC15.27■□□□□ 0.03
COL4A4P53420 AC009779.3-204ENST00000549424 367 ntTSL 3 BASIC15.27■□□□□ 0.03
COL4A4P53420 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
COL4A4P53420 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
COL4A4P53420 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
COL4A4P53420 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
COL4A4P53420 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
COL4A4P53420 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
COL4A4P53420 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC15.27■□□□□ 0.03
COL4A4P53420 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.03
COL4A4P53420 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
COL4A4P53420 AC015688.4-201ENST00000580780 1647 ntBASIC15.27■□□□□ 0.03
COL4A4P53420 AC099063.4-201ENST00000641099 1602 ntBASIC15.27■□□□□ 0.03
COL4A4P53420 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
COL4A4P53420 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 62.6 ms