Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
SMARCA1P28370 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SMARCA1P28370 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
SMARCA1P28370 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SMARCA1P28370 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SMARCA1P28370 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
SMARCA1P28370 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SMARCA1P28370 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SMARCA1P28370 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
SMARCA1P28370 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC16.75■□□□□ 0.27
SMARCA1P28370 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SMARCA1P28370 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
SMARCA1P28370 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC16.75■□□□□ 0.27
SMARCA1P28370 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SMARCA1P28370 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SMARCA1P28370 JTB-202ENST00000356648 1040 ntTSL 2 BASIC16.75■□□□□ 0.27
SMARCA1P28370 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC16.75■□□□□ 0.27
SMARCA1P28370 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC16.75■□□□□ 0.27
SMARCA1P28370 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SMARCA1P28370 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC16.75■□□□□ 0.27
SMARCA1P28370 HIST2H2BC-201ENST00000498492 580 ntBASIC16.75■□□□□ 0.27
SMARCA1P28370 RERG-205ENST00000537647 935 ntTSL 2 BASIC16.75■□□□□ 0.27
SMARCA1P28370 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC16.75■□□□□ 0.27
SMARCA1P28370 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC16.75■□□□□ 0.27
SMARCA1P28370 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC16.75■□□□□ 0.27
SMARCA1P28370 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC16.75■□□□□ 0.27
SMARCA1P28370 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC16.75■□□□□ 0.27
SMARCA1P28370 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC16.75■□□□□ 0.27
SMARCA1P28370 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC16.75■□□□□ 0.27
SMARCA1P28370 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC16.75■□□□□ 0.27
SMARCA1P28370 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SMARCA1P28370 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC16.75■□□□□ 0.27
SMARCA1P28370 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SMARCA1P28370 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SMARCA1P28370 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SMARCA1P28370 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SMARCA1P28370 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
SMARCA1P28370 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SMARCA1P28370 TSPY26P-202ENST00000565928 3884 ntBASIC16.75■□□□□ 0.27
SMARCA1P28370 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SMARCA1P28370 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC16.75■□□□□ 0.27
SMARCA1P28370 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
SMARCA1P28370 AL157791.1-201ENST00000553667 1699 ntBASIC16.75■□□□□ 0.27
SMARCA1P28370 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
SMARCA1P28370 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SMARCA1P28370 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SMARCA1P28370 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SMARCA1P28370 RAN-210ENST00000541630 1475 ntTSL 2 BASIC16.74■□□□□ 0.27
SMARCA1P28370 AC020910.6-201ENST00000623084 1459 ntBASIC16.74■□□□□ 0.27
SMARCA1P28370 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SMARCA1P28370 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
SMARCA1P28370 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
SMARCA1P28370 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SMARCA1P28370 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SMARCA1P28370 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
SMARCA1P28370 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SMARCA1P28370 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SMARCA1P28370 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SMARCA1P28370 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SMARCA1P28370 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SMARCA1P28370 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
SMARCA1P28370 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
SMARCA1P28370 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
SMARCA1P28370 SDHD-202ENST00000525291 790 ntTSL 3 BASIC16.74■□□□□ 0.27
SMARCA1P28370 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC16.74■□□□□ 0.27
SMARCA1P28370 AL139099.5-201ENST00000635274 300 ntBASIC16.74■□□□□ 0.27
SMARCA1P28370 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
SMARCA1P28370 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
SMARCA1P28370 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SMARCA1P28370 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SMARCA1P28370 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SMARCA1P28370 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
SMARCA1P28370 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SMARCA1P28370 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
SMARCA1P28370 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
SMARCA1P28370 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
SMARCA1P28370 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SMARCA1P28370 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC16.74■□□□□ 0.27
SMARCA1P28370 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC16.74■□□□□ 0.27
SMARCA1P28370 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SMARCA1P28370 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
SMARCA1P28370 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC16.74■□□□□ 0.27
SMARCA1P28370 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SMARCA1P28370 KRT8P21-201ENST00000430398 1491 ntBASIC16.73■□□□□ 0.27
SMARCA1P28370 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
SMARCA1P28370 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
SMARCA1P28370 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SMARCA1P28370 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SMARCA1P28370 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SMARCA1P28370 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC16.73■□□□□ 0.27
SMARCA1P28370 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SMARCA1P28370 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SMARCA1P28370 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC16.73■□□□□ 0.27
SMARCA1P28370 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SMARCA1P28370 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
SMARCA1P28370 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
SMARCA1P28370 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SMARCA1P28370 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC16.73■□□□□ 0.27
SMARCA1P28370 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC16.73■□□□□ 0.27
SMARCA1P28370 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 87.7 ms