Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC11.3□□□□□ -0.6
HLA-DMBP28068 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DMBP28068 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC11.3□□□□□ -0.6
HLA-DMBP28068 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DMBP28068 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DMBP28068 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DMBP28068 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
HLA-DMBP28068 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DMBP28068 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DMBP28068 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DMBP28068 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DMBP28068 KRT8P22-201ENST00000562317 1415 ntBASIC11.3□□□□□ -0.6
HLA-DMBP28068 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DMBP28068 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC11.3□□□□□ -0.6
HLA-DMBP28068 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DMBP28068 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DMBP28068 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC11.3□□□□□ -0.6
HLA-DMBP28068 TEX30-203ENST00000376022 828 ntTSL 2 BASIC11.3□□□□□ -0.6
HLA-DMBP28068 DGCR5-201ENST00000399539 862 ntBASIC11.3□□□□□ -0.6
HLA-DMBP28068 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC11.3□□□□□ -0.6
HLA-DMBP28068 KLF2P2-201ENST00000416807 1039 ntBASIC11.3□□□□□ -0.6
HLA-DMBP28068 NUS1P3-201ENST00000423502 862 ntBASIC11.3□□□□□ -0.6
HLA-DMBP28068 EIF3FP3-201ENST00000434851 1086 ntBASIC11.3□□□□□ -0.6
HLA-DMBP28068 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC11.3□□□□□ -0.6
HLA-DMBP28068 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC11.3□□□□□ -0.6
HLA-DMBP28068 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC11.3□□□□□ -0.6
HLA-DMBP28068 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC11.3□□□□□ -0.6
HLA-DMBP28068 AC104596.2-201ENST00000512793 793 ntBASIC11.3□□□□□ -0.6
HLA-DMBP28068 AC022616.1-201ENST00000518688 554 ntBASIC11.3□□□□□ -0.6
HLA-DMBP28068 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC11.3□□□□□ -0.6
HLA-DMBP28068 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC11.3□□□□□ -0.6
HLA-DMBP28068 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC11.3□□□□□ -0.6
HLA-DMBP28068 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DMBP28068 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC11.3□□□□□ -0.6
HLA-DMBP28068 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC11.3□□□□□ -0.6
HLA-DMBP28068 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC11.3□□□□□ -0.6
HLA-DMBP28068 AC124283.3-201ENST00000570869 594 ntBASIC11.3□□□□□ -0.6
HLA-DMBP28068 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DMBP28068 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC11.3□□□□□ -0.6
HLA-DMBP28068 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC11.3□□□□□ -0.6
HLA-DMBP28068 AC004466.1-201ENST00000599515 1080 ntBASIC11.3□□□□□ -0.6
HLA-DMBP28068 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC11.3□□□□□ -0.6
HLA-DMBP28068 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
HLA-DMBP28068 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC11.3□□□□□ -0.6
HLA-DMBP28068 SRP9-204ENST00000619790 377 ntTSL 2 BASIC11.3□□□□□ -0.6
HLA-DMBP28068 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC11.3□□□□□ -0.6
HLA-DMBP28068 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC11.3□□□□□ -0.6
HLA-DMBP28068 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DMBP28068 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DMBP28068 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC11.3□□□□□ -0.6
HLA-DMBP28068 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DMBP28068 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DMBP28068 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DMBP28068 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DMBP28068 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DMBP28068 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC11.3□□□□□ -0.6
HLA-DMBP28068 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DMBP28068 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DMBP28068 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DMBP28068 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
HLA-DMBP28068 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DMBP28068 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC11.3□□□□□ -0.6
HLA-DMBP28068 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DMBP28068 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC11.3□□□□□ -0.6
HLA-DMBP28068 STK40-201ENST00000359297 4837 ntTSL 2 BASIC11.3□□□□□ -0.6
HLA-DMBP28068 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DMBP28068 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DMBP28068 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC11.3□□□□□ -0.6
HLA-DMBP28068 AC131212.3-201ENST00000624087 4219 ntBASIC11.3□□□□□ -0.6
HLA-DMBP28068 ANGPTL2-202ENST00000373425 3707 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DMBP28068 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DMBP28068 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DMBP28068 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
HLA-DMBP28068 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
HLA-DMBP28068 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC11.29□□□□□ -0.6
HLA-DMBP28068 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
HLA-DMBP28068 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC11.29□□□□□ -0.6
HLA-DMBP28068 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
HLA-DMBP28068 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
HLA-DMBP28068 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC11.29□□□□□ -0.6
HLA-DMBP28068 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
HLA-DMBP28068 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC11.29□□□□□ -0.6
HLA-DMBP28068 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC11.29□□□□□ -0.6
HLA-DMBP28068 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
HLA-DMBP28068 SALL4P5-201ENST00000419001 1760 ntBASIC11.29□□□□□ -0.6
HLA-DMBP28068 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC11.29□□□□□ -0.6
HLA-DMBP28068 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
HLA-DMBP28068 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC11.29□□□□□ -0.6
HLA-DMBP28068 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
HLA-DMBP28068 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
HLA-DMBP28068 ZBTB1-201ENST00000358738 4119 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
HLA-DMBP28068 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
HLA-DMBP28068 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
HLA-DMBP28068 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
HLA-DMBP28068 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
HLA-DMBP28068 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
HLA-DMBP28068 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
HLA-DMBP28068 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
HLA-DMBP28068 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC11.29□□□□□ -0.6
HLA-DMBP28068 COX5BP8-201ENST00000416911 349 ntBASIC11.29□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms