Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
USF1P22415 PRDM16-201ENST00000270722 8690 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
USF1P22415 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
USF1P22415 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
USF1P22415 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC12.55□□□□□ -0.4
USF1P22415 TUBBP5-203ENST00000508529 1334 ntBASIC12.55□□□□□ -0.4
USF1P22415 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
USF1P22415 AGAP7P-201ENST00000582299 2062 ntBASIC12.55□□□□□ -0.4
USF1P22415 AGAP14-201ENST00000624701 2060 ntBASIC12.55□□□□□ -0.4
USF1P22415 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
USF1P22415 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
USF1P22415 FAM171B-201ENST00000304698 5826 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
USF1P22415 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
USF1P22415 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC12.55□□□□□ -0.4
USF1P22415 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC12.55□□□□□ -0.4
USF1P22415 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
USF1P22415 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC12.55□□□□□ -0.4
USF1P22415 WASH3P-207ENST00000560956 1394 ntBASIC12.55□□□□□ -0.4
USF1P22415 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
USF1P22415 CELP-203ENST00000624767 2414 ntTSL 5 BASIC12.54□□□□□ -0.4
USF1P22415 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC12.54□□□□□ -0.4
USF1P22415 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
USF1P22415 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
USF1P22415 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC12.54□□□□□ -0.4
USF1P22415 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
USF1P22415 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC12.54□□□□□ -0.4
USF1P22415 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
USF1P22415 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
USF1P22415 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
USF1P22415 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
USF1P22415 GRM1-204ENST00000492807 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
USF1P22415 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
USF1P22415 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
USF1P22415 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
USF1P22415 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
USF1P22415 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC12.54□□□□□ -0.4
USF1P22415 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
USF1P22415 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
USF1P22415 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC12.54□□□□□ -0.4
USF1P22415 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC12.54□□□□□ -0.4
USF1P22415 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
USF1P22415 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
USF1P22415 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
USF1P22415 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
USF1P22415 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC12.54□□□□□ -0.4
USF1P22415 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
USF1P22415 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC12.54□□□□□ -0.4
USF1P22415 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
USF1P22415 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC12.54□□□□□ -0.4
USF1P22415 GHSR-202ENST00000427970 912 ntBASIC12.54□□□□□ -0.4
USF1P22415 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC12.54□□□□□ -0.4
USF1P22415 MAGEA5-201ENST00000446757 942 ntBASIC12.54□□□□□ -0.4
USF1P22415 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
USF1P22415 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC12.54□□□□□ -0.4
USF1P22415 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
USF1P22415 SDHD-202ENST00000525291 790 ntTSL 3 BASIC12.54□□□□□ -0.4
USF1P22415 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
USF1P22415 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC12.54□□□□□ -0.4
USF1P22415 EID1-202ENST00000560490 584 ntTSL 3 BASIC12.54□□□□□ -0.4
USF1P22415 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC12.54□□□□□ -0.4
USF1P22415 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
USF1P22415 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
USF1P22415 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC12.54□□□□□ -0.4
USF1P22415 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
USF1P22415 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
USF1P22415 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
USF1P22415 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
USF1P22415 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC12.54□□□□□ -0.4
USF1P22415 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
USF1P22415 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
USF1P22415 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
USF1P22415 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC12.54□□□□□ -0.4
USF1P22415 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC12.54□□□□□ -0.4
USF1P22415 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
USF1P22415 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
USF1P22415 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
USF1P22415 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
USF1P22415 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC12.54□□□□□ -0.4
USF1P22415 REXO1L5P-201ENST00000622260 2098 ntBASIC12.53□□□□□ -0.4
USF1P22415 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
USF1P22415 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
USF1P22415 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
USF1P22415 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
USF1P22415 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC12.53□□□□□ -0.4
USF1P22415 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
USF1P22415 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
USF1P22415 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
USF1P22415 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC12.53□□□□□ -0.4
USF1P22415 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC12.53□□□□□ -0.4
USF1P22415 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
USF1P22415 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC12.53□□□□□ -0.4
USF1P22415 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
USF1P22415 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
USF1P22415 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
USF1P22415 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC12.53□□□□□ -0.4
USF1P22415 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
USF1P22415 TPO-203ENST00000346956 2923 ntTSL 5 BASIC12.53□□□□□ -0.4
USF1P22415 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
USF1P22415 AC026748.1-201ENST00000624349 3251 ntBASIC12.53□□□□□ -0.4
USF1P22415 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms