Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
HMGA1P17096 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
HMGA1P17096 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HMGA1P17096 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
HMGA1P17096 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HMGA1P17096 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HMGA1P17096 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC15.1■□□□□ 0.01
HMGA1P17096 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC15.1■□□□□ 0.01
HMGA1P17096 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC15.1■□□□□ 0.01
HMGA1P17096 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC15.1■□□□□ 0.01
HMGA1P17096 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC15.1■□□□□ 0.01
HMGA1P17096 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HMGA1P17096 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC15.09■□□□□ 0.01
HMGA1P17096 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGA1P17096 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGA1P17096 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGA1P17096 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGA1P17096 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
HMGA1P17096 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
HMGA1P17096 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC15.09■□□□□ 0.01
HMGA1P17096 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGA1P17096 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGA1P17096 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGA1P17096 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGA1P17096 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGA1P17096 KRT17P5-201ENST00000332088 839 ntBASIC15.09■□□□□ 0.01
HMGA1P17096 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC15.09■□□□□ 0.01
HMGA1P17096 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC15.09■□□□□ 0.01
HMGA1P17096 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC15.09■□□□□ 0.01
HMGA1P17096 AL807761.2-201ENST00000422849 729 ntBASIC15.09■□□□□ 0.01
HMGA1P17096 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC15.09■□□□□ 0.01
HMGA1P17096 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HMGA1P17096 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC15.09■□□□□ 0.01
HMGA1P17096 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC15.09■□□□□ 0.01
HMGA1P17096 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC15.09■□□□□ 0.01
HMGA1P17096 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC15.09■□□□□ 0.01
HMGA1P17096 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC15.09■□□□□ 0.01
HMGA1P17096 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC15.09■□□□□ 0.01
HMGA1P17096 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
HMGA1P17096 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC15.09■□□□□ 0.01
HMGA1P17096 AC104506.1-201ENST00000609247 429 ntBASIC15.09■□□□□ 0.01
HMGA1P17096 MIR6074-201ENST00000612054 107 ntBASIC15.09■□□□□ 0.01
HMGA1P17096 YRDCP1-201ENST00000621419 643 ntBASIC15.09■□□□□ 0.01
HMGA1P17096 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
HMGA1P17096 RER1-203ENST00000378513 3000 ntTSL 3 BASIC15.09■□□□□ 0.01
HMGA1P17096 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HMGA1P17096 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGA1P17096 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC15.09■□□□□ 0.01
HMGA1P17096 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
HMGA1P17096 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HMGA1P17096 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC15.09■□□□□ 0.01
HMGA1P17096 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGA1P17096 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGA1P17096 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HMGA1P17096 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGA1P17096 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
HMGA1P17096 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
HMGA1P17096 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGA1P17096 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGA1P17096 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGA1P17096 TPO-203ENST00000346956 2923 ntTSL 5 BASIC15.09■□□□□ 0.01
HMGA1P17096 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGA1P17096 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGA1P17096 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HMGA1P17096 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC15.09■□□□□ 0.01
HMGA1P17096 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGA1P17096 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGA1P17096 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGA1P17096 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC15.08■□□□□ 0.01
HMGA1P17096 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
HMGA1P17096 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0.01
HMGA1P17096 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
HMGA1P17096 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
HMGA1P17096 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
HMGA1P17096 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
HMGA1P17096 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
HMGA1P17096 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
HMGA1P17096 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
HMGA1P17096 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
HMGA1P17096 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
HMGA1P17096 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
HMGA1P17096 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
HMGA1P17096 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC15.08■□□□□ 0
HMGA1P17096 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC15.08■□□□□ 0
HMGA1P17096 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
HMGA1P17096 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC15.08■□□□□ 0
HMGA1P17096 AL592076.1-201ENST00000424448 303 ntBASIC15.08■□□□□ 0
HMGA1P17096 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC15.08■□□□□ 0
HMGA1P17096 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC15.08■□□□□ 0
HMGA1P17096 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC15.08■□□□□ 0
HMGA1P17096 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
HMGA1P17096 AC022447.6-201ENST00000515522 438 ntBASIC15.08■□□□□ 0
HMGA1P17096 KRT8P1-201ENST00000557533 1207 ntBASIC15.08■□□□□ 0
HMGA1P17096 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC15.08■□□□□ 0
HMGA1P17096 AC140658.4-201ENST00000561990 352 ntBASIC15.08■□□□□ 0
HMGA1P17096 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC15.08■□□□□ 0
HMGA1P17096 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC15.08■□□□□ 0
HMGA1P17096 AC092171.5-201ENST00000608012 942 ntBASIC15.08■□□□□ 0
HMGA1P17096 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
HMGA1P17096 SNX1-214ENST00000625244 324 ntTSL 5 BASIC15.08■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 61.7 ms