Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CSB-PGBD3P0DP91 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC19.3■□□□□ 0.68
CSB-PGBD3P0DP91 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CSB-PGBD3P0DP91 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CSB-PGBD3P0DP91 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CSB-PGBD3P0DP91 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CSB-PGBD3P0DP91 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CSB-PGBD3P0DP91 TEKT4P2-202ENST00000559466 1312 ntBASIC19.29■□□□□ 0.68
CSB-PGBD3P0DP91 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC19.29■□□□□ 0.68
CSB-PGBD3P0DP91 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
CSB-PGBD3P0DP91 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC19.29■□□□□ 0.68
CSB-PGBD3P0DP91 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CSB-PGBD3P0DP91 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CSB-PGBD3P0DP91 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CSB-PGBD3P0DP91 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CSB-PGBD3P0DP91 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CSB-PGBD3P0DP91 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC19.29■□□□□ 0.68
CSB-PGBD3P0DP91 IDS-203ENST00000428056 1213 ntTSL 2 BASIC19.29■□□□□ 0.68
CSB-PGBD3P0DP91 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CSB-PGBD3P0DP91 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC19.29■□□□□ 0.68
CSB-PGBD3P0DP91 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CSB-PGBD3P0DP91 AC009119.2-201ENST00000561562 723 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
CSB-PGBD3P0DP91 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC19.29■□□□□ 0.68
CSB-PGBD3P0DP91 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC19.29■□□□□ 0.68
CSB-PGBD3P0DP91 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
CSB-PGBD3P0DP91 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
CSB-PGBD3P0DP91 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CSB-PGBD3P0DP91 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CSB-PGBD3P0DP91 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CSB-PGBD3P0DP91 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC19.29■□□□□ 0.68
CSB-PGBD3P0DP91 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CSB-PGBD3P0DP91 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC19.29■□□□□ 0.68
CSB-PGBD3P0DP91 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CSB-PGBD3P0DP91 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
CSB-PGBD3P0DP91 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
CSB-PGBD3P0DP91 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CSB-PGBD3P0DP91 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CSB-PGBD3P0DP91 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CSB-PGBD3P0DP91 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC19.29■□□□□ 0.68
CSB-PGBD3P0DP91 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC19.29■□□□□ 0.68
CSB-PGBD3P0DP91 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
CSB-PGBD3P0DP91 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC19.28■□□□□ 0.68
CSB-PGBD3P0DP91 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CSB-PGBD3P0DP91 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CSB-PGBD3P0DP91 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CSB-PGBD3P0DP91 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CSB-PGBD3P0DP91 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CSB-PGBD3P0DP91 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CSB-PGBD3P0DP91 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CSB-PGBD3P0DP91 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CSB-PGBD3P0DP91 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CSB-PGBD3P0DP91 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC19.28■□□□□ 0.68
CSB-PGBD3P0DP91 CELP-203ENST00000624767 2414 ntTSL 5 BASIC19.28■□□□□ 0.68
CSB-PGBD3P0DP91 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC19.28■□□□□ 0.68
CSB-PGBD3P0DP91 MIR645-201ENST00000385283 94 ntBASIC19.28■□□□□ 0.68
CSB-PGBD3P0DP91 STK16-203ENST00000409516 895 ntTSL 2 BASIC19.28■□□□□ 0.68
CSB-PGBD3P0DP91 GAS5-209ENST00000430245 723 ntTSL 3 BASIC19.28■□□□□ 0.68
CSB-PGBD3P0DP91 AC024293.1-201ENST00000467930 498 ntBASIC19.28■□□□□ 0.68
CSB-PGBD3P0DP91 CD164-210ENST00000512821 964 ntTSL 2 BASIC19.28■□□□□ 0.68
CSB-PGBD3P0DP91 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC19.28■□□□□ 0.68
CSB-PGBD3P0DP91 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC19.28■□□□□ 0.68
CSB-PGBD3P0DP91 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CSB-PGBD3P0DP91 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC19.28■□□□□ 0.68
CSB-PGBD3P0DP91 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC19.28■□□□□ 0.68
CSB-PGBD3P0DP91 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC19.28■□□□□ 0.68
CSB-PGBD3P0DP91 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC19.28■□□□□ 0.68
CSB-PGBD3P0DP91 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
CSB-PGBD3P0DP91 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CSB-PGBD3P0DP91 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC19.28■□□□□ 0.68
CSB-PGBD3P0DP91 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CSB-PGBD3P0DP91 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC19.28■□□□□ 0.68
CSB-PGBD3P0DP91 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC19.28■□□□□ 0.68
CSB-PGBD3P0DP91 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CSB-PGBD3P0DP91 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
CSB-PGBD3P0DP91 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CSB-PGBD3P0DP91 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CSB-PGBD3P0DP91 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC19.28■□□□□ 0.68
CSB-PGBD3P0DP91 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CSB-PGBD3P0DP91 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CSB-PGBD3P0DP91 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC19.28■□□□□ 0.68
CSB-PGBD3P0DP91 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CSB-PGBD3P0DP91 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CSB-PGBD3P0DP91 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
CSB-PGBD3P0DP91 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CSB-PGBD3P0DP91 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
CSB-PGBD3P0DP91 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC19.27■□□□□ 0.68
CSB-PGBD3P0DP91 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
CSB-PGBD3P0DP91 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CSB-PGBD3P0DP91 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC19.27■□□□□ 0.68
CSB-PGBD3P0DP91 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CSB-PGBD3P0DP91 AC006372.4-201ENST00000624122 1543 ntBASIC19.27■□□□□ 0.68
CSB-PGBD3P0DP91 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CSB-PGBD3P0DP91 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CSB-PGBD3P0DP91 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CSB-PGBD3P0DP91 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CSB-PGBD3P0DP91 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
CSB-PGBD3P0DP91 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CSB-PGBD3P0DP91 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
CSB-PGBD3P0DP91 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CSB-PGBD3P0DP91 TMEM176B-201ENST00000326442 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms