Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC17.24■□□□□ 0.35
HLA-DOAP06340 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HLA-DOAP06340 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
HLA-DOAP06340 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
HLA-DOAP06340 AC018529.2-202ENST00000611482 3087 ntBASIC17.24■□□□□ 0.35
HLA-DOAP06340 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
HLA-DOAP06340 RNA5SP359-201ENST00000364838 113 ntBASIC17.24■□□□□ 0.35
HLA-DOAP06340 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC17.24■□□□□ 0.35
HLA-DOAP06340 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC17.24■□□□□ 0.35
HLA-DOAP06340 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC17.24■□□□□ 0.35
HLA-DOAP06340 ST13P19-201ENST00000442505 1124 ntBASIC17.24■□□□□ 0.35
HLA-DOAP06340 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC17.24■□□□□ 0.35
HLA-DOAP06340 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC17.24■□□□□ 0.35
HLA-DOAP06340 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC17.24■□□□□ 0.35
HLA-DOAP06340 NAT9-220ENST00000582870 896 ntTSL 5 BASIC17.24■□□□□ 0.35
HLA-DOAP06340 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC17.24■□□□□ 0.35
HLA-DOAP06340 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HLA-DOAP06340 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HLA-DOAP06340 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
HLA-DOAP06340 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
HLA-DOAP06340 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HLA-DOAP06340 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HLA-DOAP06340 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HLA-DOAP06340 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC17.24■□□□□ 0.35
HLA-DOAP06340 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC17.24■□□□□ 0.35
HLA-DOAP06340 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HLA-DOAP06340 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC17.24■□□□□ 0.35
HLA-DOAP06340 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC17.24■□□□□ 0.35
HLA-DOAP06340 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HLA-DOAP06340 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
HLA-DOAP06340 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HLA-DOAP06340 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC17.24■□□□□ 0.35
HLA-DOAP06340 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HLA-DOAP06340 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
HLA-DOAP06340 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC17.23■□□□□ 0.35
HLA-DOAP06340 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
HLA-DOAP06340 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HLA-DOAP06340 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
HLA-DOAP06340 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
HLA-DOAP06340 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HLA-DOAP06340 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC17.23■□□□□ 0.35
HLA-DOAP06340 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC17.23■□□□□ 0.35
HLA-DOAP06340 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC17.23■□□□□ 0.35
HLA-DOAP06340 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
HLA-DOAP06340 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
HLA-DOAP06340 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
HLA-DOAP06340 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
HLA-DOAP06340 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HLA-DOAP06340 OR2K2-202ENST00000374428 1038 ntBASIC17.23■□□□□ 0.35
HLA-DOAP06340 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
HLA-DOAP06340 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HLA-DOAP06340 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HLA-DOAP06340 MPV17-204ENST00000399052 749 ntTSL 4 BASIC17.23■□□□□ 0.35
HLA-DOAP06340 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC17.23■□□□□ 0.35
HLA-DOAP06340 RPL8P2-201ENST00000430538 502 ntBASIC17.23■□□□□ 0.35
HLA-DOAP06340 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC17.23■□□□□ 0.35
HLA-DOAP06340 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HLA-DOAP06340 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC17.23■□□□□ 0.35
HLA-DOAP06340 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC17.23■□□□□ 0.35
HLA-DOAP06340 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC17.23■□□□□ 0.35
HLA-DOAP06340 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HLA-DOAP06340 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HLA-DOAP06340 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
HLA-DOAP06340 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC17.23■□□□□ 0.35
HLA-DOAP06340 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HLA-DOAP06340 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC17.23■□□□□ 0.35
HLA-DOAP06340 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC17.23■□□□□ 0.35
HLA-DOAP06340 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HLA-DOAP06340 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
HLA-DOAP06340 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HLA-DOAP06340 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HLA-DOAP06340 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC17.23■□□□□ 0.35
HLA-DOAP06340 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC17.23■□□□□ 0.35
HLA-DOAP06340 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HLA-DOAP06340 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC17.23■□□□□ 0.35
HLA-DOAP06340 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HLA-DOAP06340 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
HLA-DOAP06340 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HLA-DOAP06340 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC17.23■□□□□ 0.35
HLA-DOAP06340 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
HLA-DOAP06340 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC17.23■□□□□ 0.35
HLA-DOAP06340 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HLA-DOAP06340 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC17.23■□□□□ 0.35
HLA-DOAP06340 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC17.23■□□□□ 0.35
HLA-DOAP06340 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
HLA-DOAP06340 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
HLA-DOAP06340 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
HLA-DOAP06340 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
HLA-DOAP06340 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
HLA-DOAP06340 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HLA-DOAP06340 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HLA-DOAP06340 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC17.22■□□□□ 0.35
HLA-DOAP06340 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
HLA-DOAP06340 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HLA-DOAP06340 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
HLA-DOAP06340 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC17.22■□□□□ 0.35
HLA-DOAP06340 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HLA-DOAP06340 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HLA-DOAP06340 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HLA-DOAP06340 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms