Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 DYSF-203ENST00000409366 6606 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
HLA-DQA1P01909 DYSF-205ENST00000409651 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
HLA-DQA1P01909 RAB11FIP1-202ENST00000330843 7811 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
HLA-DQA1P01909 MYNN-201ENST00000349841 4999 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
HLA-DQA1P01909 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
HLA-DQA1P01909 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
HLA-DQA1P01909 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC11.15□□□□□ -0.62
HLA-DQA1P01909 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
HLA-DQA1P01909 DLX3-201ENST00000434704 2602 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
HLA-DQA1P01909 RIOK3-203ENST00000577501 1904 ntAPPRIS ALT1 TSL 1 (best) BASIC11.15□□□□□ -0.62
HLA-DQA1P01909 GNL1-201ENST00000376621 7490 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
HLA-DQA1P01909 TGM1-201ENST00000206765 2777 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
HLA-DQA1P01909 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC11.15□□□□□ -0.63
HLA-DQA1P01909 FBN3-201ENST00000270509 9232 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
HLA-DQA1P01909 LPO-203ENST00000421678 2729 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.63
HLA-DQA1P01909 SMAGP-203ENST00000603798 2350 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 XRRA1-207ENST00000527087 2505 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 FAM120C-202ENST00000375180 8057 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 MYADM-201ENST00000336967 3047 ntAPPRIS P1 TSL 2 BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 B3GAT1-202ENST00000392580 3522 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 CADM1-204ENST00000536727 3520 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 HPX-201ENST00000265983 1652 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 NISCH-212ENST00000488380 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 WNT5A-201ENST00000264634 6176 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 POU2AF1-201ENST00000393067 3295 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 AC135782.3-201ENST00000562782 2105 ntBASIC11.14□□□□□ -0.63
HLA-DQA1P01909 LARP7-202ENST00000344442 2286 ntAPPRIS P1 TSL 2 BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 TP73-201ENST00000346387 4854 ntTSL 5 BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 GGA3-214ENST00000582717 2255 ntTSL 2 BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 NRDC-202ENST00000354831 3895 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 YY1AP1-208ENST00000361831 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 AC136604.1-202ENST00000425471 771 ntBASIC11.14□□□□□ -0.63
HLA-DQA1P01909 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 RPL28-209ENST00000560055 670 ntTSL 3 BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 AC073389.1-201ENST00000595595 795 ntBASIC11.14□□□□□ -0.63
HLA-DQA1P01909 SPIB-207ENST00000597855 564 ntTSL 4 BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 BX640515.1-201ENST00000617215 977 ntBASIC11.14□□□□□ -0.63
HLA-DQA1P01909 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 ENG-202ENST00000373203 3048 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 SLC5A9-210ENST00000533824 2219 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 SLC4A5-205ENST00000394019 6348 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 PER3-208ENST00000613533 6318 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 CACNB4-210ENST00000539935 8378 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 AP3S2-216ENST00000617003 1561 ntBASIC11.14□□□□□ -0.63
HLA-DQA1P01909 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 NSD2-203ENST00000382888 2666 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 MTMR4-204ENST00000579925 5622 ntTSL 5 BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 SH3BP2-203ENST00000442312 9211 ntAPPRIS ALT2 TSL 2 BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 SIX4-201ENST00000216513 6285 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 TSPAN31-201ENST00000257910 1849 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 AGAP10P-201ENST00000454844 2418 ntBASIC11.14□□□□□ -0.63
HLA-DQA1P01909 RRM2B-211ENST00000621845 3483 ntTSL 2 BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC11.14□□□□□ -0.63
HLA-DQA1P01909 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
HLA-DQA1P01909 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
HLA-DQA1P01909 AC106818.1-201ENST00000623223 3242 ntBASIC11.13□□□□□ -0.63
HLA-DQA1P01909 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
HLA-DQA1P01909 ANTXR2-203ENST00000403729 8273 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
HLA-DQA1P01909 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
HLA-DQA1P01909 RIMS1-218ENST00000522291 3876 ntTSL 5 BASIC11.13□□□□□ -0.63
HLA-DQA1P01909 RERE-201ENST00000337907 8026 ntAPPRIS P2 TSL 1 (best) BASIC11.13□□□□□ -0.63
HLA-DQA1P01909 GTF2IRD2-201ENST00000451013 3558 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
HLA-DQA1P01909 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
HLA-DQA1P01909 C16orf82-201ENST00000418886 2268 ntAPPRIS ALT2 BASIC11.13□□□□□ -0.63
HLA-DQA1P01909 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
HLA-DQA1P01909 AL022342.1-201ENST00000400363 863 ntBASIC11.13□□□□□ -0.63
HLA-DQA1P01909 AZGP1P1-201ENST00000411909 902 ntBASIC11.13□□□□□ -0.63
HLA-DQA1P01909 IGLL3P-201ENST00000412472 434 ntBASIC11.13□□□□□ -0.63
HLA-DQA1P01909 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC11.13□□□□□ -0.63
HLA-DQA1P01909 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
HLA-DQA1P01909 HCG4B-203ENST00000450128 991 ntBASIC11.13□□□□□ -0.63
HLA-DQA1P01909 PFN2-205ENST00000461868 613 ntTSL 2 BASIC11.13□□□□□ -0.63
HLA-DQA1P01909 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC11.13□□□□□ -0.63
HLA-DQA1P01909 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC11.13□□□□□ -0.63
HLA-DQA1P01909 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms