Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
RTN3O95197 MECR-202ENST00000373791 2416 ntTSL 2 BASIC15.56■□□□□ 0.08
RTN3O95197 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
RTN3O95197 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC15.56■□□□□ 0.08
RTN3O95197 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RTN3O95197 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
RTN3O95197 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
RTN3O95197 AC118758.2-201ENST00000614242 2813 ntBASIC15.56■□□□□ 0.08
RTN3O95197 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC15.56■□□□□ 0.08
RTN3O95197 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RTN3O95197 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
RTN3O95197 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RTN3O95197 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC15.56■□□□□ 0.08
RTN3O95197 SKA2-202ENST00000437036 625 ntTSL 2 BASIC15.56■□□□□ 0.08
RTN3O95197 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC15.56■□□□□ 0.08
RTN3O95197 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC15.56■□□□□ 0.08
RTN3O95197 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC15.56■□□□□ 0.08
RTN3O95197 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC15.56■□□□□ 0.08
RTN3O95197 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC15.56■□□□□ 0.08
RTN3O95197 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
RTN3O95197 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
RTN3O95197 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
RTN3O95197 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC15.56■□□□□ 0.08
RTN3O95197 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
RTN3O95197 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
RTN3O95197 AC020914.3-201ENST00000594712 304 ntBASIC15.56■□□□□ 0.08
RTN3O95197 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC15.56■□□□□ 0.08
RTN3O95197 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
RTN3O95197 KC6-205ENST00000599934 556 ntTSL 4 BASIC15.56■□□□□ 0.08
RTN3O95197 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
RTN3O95197 AC027601.3-201ENST00000622907 509 ntBASIC15.56■□□□□ 0.08
RTN3O95197 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC15.56■□□□□ 0.08
RTN3O95197 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RTN3O95197 MRPL37P1-201ENST00000592451 1337 ntBASIC15.56■□□□□ 0.08
RTN3O95197 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RTN3O95197 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RTN3O95197 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RTN3O95197 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RTN3O95197 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC15.56■□□□□ 0.08
RTN3O95197 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RTN3O95197 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RTN3O95197 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RTN3O95197 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RTN3O95197 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC15.56■□□□□ 0.08
RTN3O95197 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC15.56■□□□□ 0.08
RTN3O95197 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RTN3O95197 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RTN3O95197 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RTN3O95197 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
RTN3O95197 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC15.55■□□□□ 0.08
RTN3O95197 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
RTN3O95197 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
RTN3O95197 WDR24-201ENST00000248142 2763 ntTSL 5 BASIC15.55■□□□□ 0.08
RTN3O95197 COL6A4P2-202ENST00000504443 2753 ntBASIC15.55■□□□□ 0.08
RTN3O95197 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
RTN3O95197 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
RTN3O95197 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RTN3O95197 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
RTN3O95197 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RTN3O95197 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
RTN3O95197 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RTN3O95197 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
RTN3O95197 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC15.55■□□□□ 0.08
RTN3O95197 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC15.55■□□□□ 0.08
RTN3O95197 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
RTN3O95197 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
RTN3O95197 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RTN3O95197 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
RTN3O95197 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC15.55■□□□□ 0.08
RTN3O95197 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC15.55■□□□□ 0.08
RTN3O95197 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC15.55■□□□□ 0.08
RTN3O95197 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC15.55■□□□□ 0.08
RTN3O95197 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC15.55■□□□□ 0.08
RTN3O95197 MIR4783-201ENST00000580343 82 ntBASIC15.55■□□□□ 0.08
RTN3O95197 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
RTN3O95197 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
RTN3O95197 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
RTN3O95197 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
RTN3O95197 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RTN3O95197 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
RTN3O95197 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
RTN3O95197 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
RTN3O95197 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
RTN3O95197 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RTN3O95197 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RTN3O95197 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC15.55■□□□□ 0.08
RTN3O95197 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
RTN3O95197 FUBP1-203ENST00000370768 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RTN3O95197 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RTN3O95197 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RTN3O95197 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC15.55■□□□□ 0.08
RTN3O95197 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
RTN3O95197 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
RTN3O95197 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RTN3O95197 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
RTN3O95197 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RTN3O95197 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RTN3O95197 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
RTN3O95197 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC15.54■□□□□ 0.08
RTN3O95197 ELK1-201ENST00000247161 2695 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms