Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CHMP2AO43633 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CHMP2AO43633 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
CHMP2AO43633 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHMP2AO43633 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHMP2AO43633 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC16.56■□□□□ 0.24
CHMP2AO43633 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC16.56■□□□□ 0.24
CHMP2AO43633 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHMP2AO43633 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHMP2AO43633 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC16.56■□□□□ 0.24
CHMP2AO43633 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CHMP2AO43633 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHMP2AO43633 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CHMP2AO43633 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CHMP2AO43633 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CHMP2AO43633 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHMP2AO43633 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHMP2AO43633 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC16.56■□□□□ 0.24
CHMP2AO43633 AC126915.1-201ENST00000522847 1038 ntBASIC16.56■□□□□ 0.24
CHMP2AO43633 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC16.56■□□□□ 0.24
CHMP2AO43633 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC16.56■□□□□ 0.24
CHMP2AO43633 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC16.56■□□□□ 0.24
CHMP2AO43633 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC16.56■□□□□ 0.24
CHMP2AO43633 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
CHMP2AO43633 MIR3615-201ENST00000581999 87 ntBASIC16.56■□□□□ 0.24
CHMP2AO43633 AC005962.1-201ENST00000584100 773 ntBASIC16.56■□□□□ 0.24
CHMP2AO43633 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CHMP2AO43633 MIR6787-201ENST00000616675 61 ntBASIC16.56■□□□□ 0.24
CHMP2AO43633 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHMP2AO43633 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC16.56■□□□□ 0.24
CHMP2AO43633 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CHMP2AO43633 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHMP2AO43633 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC16.56■□□□□ 0.24
CHMP2AO43633 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHMP2AO43633 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHMP2AO43633 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CHMP2AO43633 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHMP2AO43633 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHMP2AO43633 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHMP2AO43633 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.56■□□□□ 0.24
CHMP2AO43633 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
CHMP2AO43633 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
CHMP2AO43633 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
CHMP2AO43633 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHMP2AO43633 ABR-205ENST00000544583 5595 ntTSL 2 BASIC16.56■□□□□ 0.24
CHMP2AO43633 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHMP2AO43633 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
CHMP2AO43633 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC16.55■□□□□ 0.24
CHMP2AO43633 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHMP2AO43633 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC16.55■□□□□ 0.24
CHMP2AO43633 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHMP2AO43633 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CHMP2AO43633 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHMP2AO43633 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
CHMP2AO43633 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC16.55■□□□□ 0.24
CHMP2AO43633 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHMP2AO43633 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC16.55■□□□□ 0.24
CHMP2AO43633 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CHMP2AO43633 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHMP2AO43633 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CHMP2AO43633 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC16.55■□□□□ 0.24
CHMP2AO43633 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CHMP2AO43633 GPAA1P2-201ENST00000417923 928 ntBASIC16.55■□□□□ 0.24
CHMP2AO43633 NKAIN1P1-201ENST00000435754 582 ntBASIC16.55■□□□□ 0.24
CHMP2AO43633 AC004898.1-201ENST00000451057 766 ntBASIC16.55■□□□□ 0.24
CHMP2AO43633 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC16.55■□□□□ 0.24
CHMP2AO43633 SERPINA13P-202ENST00000478994 924 ntBASIC16.55■□□□□ 0.24
CHMP2AO43633 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC16.55■□□□□ 0.24
CHMP2AO43633 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
CHMP2AO43633 EID1-202ENST00000560490 584 ntTSL 3 BASIC16.55■□□□□ 0.24
CHMP2AO43633 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CHMP2AO43633 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC16.55■□□□□ 0.24
CHMP2AO43633 MVK-217ENST00000639206 367 ntTSL 5 BASIC16.55■□□□□ 0.24
CHMP2AO43633 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHMP2AO43633 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
CHMP2AO43633 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHMP2AO43633 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CHMP2AO43633 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHMP2AO43633 AC139749.1-202ENST00000617529 3139 ntBASIC16.55■□□□□ 0.24
CHMP2AO43633 AC103702.1-201ENST00000548801 2630 ntBASIC16.55■□□□□ 0.24
CHMP2AO43633 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CHMP2AO43633 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHMP2AO43633 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC16.55■□□□□ 0.24
CHMP2AO43633 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHMP2AO43633 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
CHMP2AO43633 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC16.55■□□□□ 0.24
CHMP2AO43633 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHMP2AO43633 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CHMP2AO43633 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC16.54■□□□□ 0.24
CHMP2AO43633 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC16.54■□□□□ 0.24
CHMP2AO43633 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
CHMP2AO43633 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
CHMP2AO43633 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
CHMP2AO43633 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CHMP2AO43633 AC139712.1-201ENST00000378256 1875 ntBASIC16.54■□□□□ 0.24
CHMP2AO43633 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CHMP2AO43633 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
CHMP2AO43633 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CHMP2AO43633 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CHMP2AO43633 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms