Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 RBM15-202ENST00000487146 3316 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM1O00151 APBB2-211ENST00000506352 3316 ntAPPRIS ALT1 TSL 5 BASIC14.13□□□□□ -0.15
PDLIM1O00151 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM1O00151 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM1O00151 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM1O00151 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM1O00151 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC14.13□□□□□ -0.15
PDLIM1O00151 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC14.13□□□□□ -0.15
PDLIM1O00151 AP002761.4-201ENST00000565433 3361 ntBASIC14.13□□□□□ -0.15
PDLIM1O00151 AL022323.5-201ENST00000624101 2059 ntBASIC14.13□□□□□ -0.15
PDLIM1O00151 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM1O00151 TBC1D8B-202ENST00000310452 2589 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM1O00151 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM1O00151 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM1O00151 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC14.13□□□□□ -0.15
PDLIM1O00151 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM1O00151 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM1O00151 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
PDLIM1O00151 DNAJB13-201ENST00000339764 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM1O00151 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM1O00151 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
PDLIM1O00151 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM1O00151 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC14.13□□□□□ -0.15
PDLIM1O00151 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC14.13□□□□□ -0.15
PDLIM1O00151 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC14.13□□□□□ -0.15
PDLIM1O00151 AC004890.2-204ENST00000481968 304 ntBASIC14.13□□□□□ -0.15
PDLIM1O00151 AC093214.1-201ENST00000511688 1107 ntBASIC14.13□□□□□ -0.15
PDLIM1O00151 IGHV3-42-201ENST00000520410 361 ntBASIC14.13□□□□□ -0.15
PDLIM1O00151 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM1O00151 MPI-209ENST00000564003 1195 ntTSL 2 BASIC14.13□□□□□ -0.15
PDLIM1O00151 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC14.13□□□□□ -0.15
PDLIM1O00151 AL390754.1-201ENST00000619088 582 ntBASIC14.13□□□□□ -0.15
PDLIM1O00151 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
PDLIM1O00151 RAB34-223ENST00000636154 730 ntTSL 2 BASIC14.13□□□□□ -0.15
PDLIM1O00151 KRT74-203ENST00000549343 2858 ntTSL 5 BASIC14.13□□□□□ -0.15
PDLIM1O00151 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM1O00151 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM1O00151 BCKDHB-201ENST00000320393 3692 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM1O00151 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM1O00151 NGLY1-205ENST00000417874 2062 ntTSL 2 BASIC14.13□□□□□ -0.15
PDLIM1O00151 AGGF1P1-201ENST00000509500 2073 ntBASIC14.13□□□□□ -0.15
PDLIM1O00151 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC14.13□□□□□ -0.15
PDLIM1O00151 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM1O00151 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM1O00151 AC087499.5-201ENST00000452760 1342 ntBASIC14.13□□□□□ -0.15
PDLIM1O00151 SLC22A5-201ENST00000245407 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM1O00151 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM1O00151 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC14.13□□□□□ -0.15
PDLIM1O00151 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
PDLIM1O00151 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
PDLIM1O00151 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC14.12□□□□□ -0.15
PDLIM1O00151 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PDLIM1O00151 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC14.12□□□□□ -0.15
PDLIM1O00151 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC14.12□□□□□ -0.15
PDLIM1O00151 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC14.12□□□□□ -0.15
PDLIM1O00151 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
PDLIM1O00151 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PDLIM1O00151 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
PDLIM1O00151 KIFC3-211ENST00000562903 3221 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
PDLIM1O00151 FGFR1-207ENST00000397103 2953 ntTSL 5 BASIC14.12□□□□□ -0.15
PDLIM1O00151 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
PDLIM1O00151 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
PDLIM1O00151 IMPDH1P4-201ENST00000445028 1534 ntBASIC14.12□□□□□ -0.15
PDLIM1O00151 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC14.12□□□□□ -0.15
PDLIM1O00151 ACIN1-204ENST00000397341 2738 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
PDLIM1O00151 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
PDLIM1O00151 WASHC5-202ENST00000517845 3667 ntTSL 2 BASIC14.12□□□□□ -0.15
PDLIM1O00151 EPN2-205ENST00000395626 2863 ntTSL 2 BASIC14.12□□□□□ -0.15
PDLIM1O00151 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PDLIM1O00151 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
PDLIM1O00151 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PDLIM1O00151 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.15
PDLIM1O00151 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
PDLIM1O00151 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
PDLIM1O00151 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
PDLIM1O00151 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC14.12□□□□□ -0.15
PDLIM1O00151 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PDLIM1O00151 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PDLIM1O00151 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC14.12□□□□□ -0.15
PDLIM1O00151 BCRP1-201ENST00000444246 691 ntBASIC14.12□□□□□ -0.15
PDLIM1O00151 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC14.12□□□□□ -0.15
PDLIM1O00151 RNA5SP421-201ENST00000516864 134 ntBASIC14.12□□□□□ -0.15
PDLIM1O00151 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC14.12□□□□□ -0.15
PDLIM1O00151 ZNF890P-202ENST00000530367 1156 ntBASIC14.12□□□□□ -0.15
PDLIM1O00151 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC14.12□□□□□ -0.15
PDLIM1O00151 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC14.12□□□□□ -0.15
PDLIM1O00151 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC14.12□□□□□ -0.15
PDLIM1O00151 INO80C-206ENST00000586489 594 ntTSL 3 BASIC14.12□□□□□ -0.15
PDLIM1O00151 AL096865.1-201ENST00000606796 927 ntBASIC14.12□□□□□ -0.15
PDLIM1O00151 AL844908.2-201ENST00000609461 460 ntBASIC14.12□□□□□ -0.15
PDLIM1O00151 EWSAT1-201ENST00000415504 2214 ntTSL 2 BASIC14.12□□□□□ -0.15
PDLIM1O00151 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PDLIM1O00151 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
PDLIM1O00151 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
PDLIM1O00151 SH2D7-201ENST00000328828 2750 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
PDLIM1O00151 PCDHGB7-202ENST00000612073 2785 ntAPPRIS ALT2 BASIC14.12□□□□□ -0.15
PDLIM1O00151 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PDLIM1O00151 OSBP2-219ENST00000535268 3248 ntTSL 2 BASIC14.12□□□□□ -0.15
PDLIM1O00151 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PDLIM1O00151 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms