Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 MYO1C-218ENST00000575158 4804 ntAPPRIS P3 TSL 5 BASIC13.11□□□□□ -0.31
MMP28Q9H239 KDELR1-201ENST00000330720 1557 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
MMP28Q9H239 ZNF721-205ENST00000511833 2966 ntAPPRIS P1 TSL 4 BASIC13.11□□□□□ -0.31
MMP28Q9H239 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
MMP28Q9H239 UBFD1-207ENST00000567212 4727 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
MMP28Q9H239 SLC5A5-201ENST00000222248 3576 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
MMP28Q9H239 GTF2IRD2B-203ENST00000472837 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
MMP28Q9H239 NF1-204ENST00000431387 2889 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
MMP28Q9H239 SEMA3F-201ENST00000002829 3802 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
MMP28Q9H239 NFATC1-204ENST00000397790 3453 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
MMP28Q9H239 ARHGEF4-217ENST00000611048 3486 ntTSL 5 BASIC13.11□□□□□ -0.31
MMP28Q9H239 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
MMP28Q9H239 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
MMP28Q9H239 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
MMP28Q9H239 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC13.11□□□□□ -0.31
MMP28Q9H239 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC13.11□□□□□ -0.31
MMP28Q9H239 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
MMP28Q9H239 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
MMP28Q9H239 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC13.11□□□□□ -0.31
MMP28Q9H239 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
MMP28Q9H239 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
MMP28Q9H239 AL354702.1-201ENST00000442006 1960 ntBASIC13.11□□□□□ -0.31
MMP28Q9H239 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
MMP28Q9H239 ADK-205ENST00000539909 1866 ntTSL 2 BASIC13.11□□□□□ -0.31
MMP28Q9H239 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
MMP28Q9H239 VENTXP1-201ENST00000569334 2716 ntBASIC13.11□□□□□ -0.31
MMP28Q9H239 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
MMP28Q9H239 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
MMP28Q9H239 BAIAP3-201ENST00000324385 4678 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
MMP28Q9H239 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
MMP28Q9H239 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
MMP28Q9H239 AC004987.2-201ENST00000395959 1148 ntBASIC13.11□□□□□ -0.31
MMP28Q9H239 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
MMP28Q9H239 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
MMP28Q9H239 BCRP1-201ENST00000444246 691 ntBASIC13.11□□□□□ -0.31
MMP28Q9H239 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC13.11□□□□□ -0.31
MMP28Q9H239 LHX6-205ENST00000464484 666 ntTSL 2 BASIC13.11□□□□□ -0.31
MMP28Q9H239 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC13.11□□□□□ -0.31
MMP28Q9H239 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC13.11□□□□□ -0.31
MMP28Q9H239 AL512356.2-201ENST00000546955 174 ntBASIC13.11□□□□□ -0.31
MMP28Q9H239 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC13.11□□□□□ -0.31
MMP28Q9H239 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
MMP28Q9H239 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC13.11□□□□□ -0.31
MMP28Q9H239 AL096865.1-201ENST00000606796 927 ntBASIC13.11□□□□□ -0.31
MMP28Q9H239 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
MMP28Q9H239 AC007967.4-201ENST00000614700 386 ntBASIC13.11□□□□□ -0.31
MMP28Q9H239 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC13.11□□□□□ -0.31
MMP28Q9H239 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC13.11□□□□□ -0.31
MMP28Q9H239 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
MMP28Q9H239 ELN-222ENST00000458204 3147 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
MMP28Q9H239 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
MMP28Q9H239 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
MMP28Q9H239 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
MMP28Q9H239 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
MMP28Q9H239 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
MMP28Q9H239 MYRIP-204ENST00000444716 2678 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
MMP28Q9H239 INTS6-201ENST00000311234 3662 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
MMP28Q9H239 EPHA5-203ENST00000432638 3662 ntTSL 5 BASIC13.11□□□□□ -0.31
MMP28Q9H239 STAB1-201ENST00000321725 7928 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
MMP28Q9H239 NPAS4-201ENST00000311034 3303 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
MMP28Q9H239 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
MMP28Q9H239 RNH1-224ENST00000534797 2973 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
MMP28Q9H239 AMOTL2-212ENST00000514516 4521 ntTSL 2 BASIC13.11□□□□□ -0.31
MMP28Q9H239 PRKN-205ENST00000366897 2877 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
MMP28Q9H239 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
MMP28Q9H239 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
MMP28Q9H239 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC13.1□□□□□ -0.31
MMP28Q9H239 KIAA1683-201ENST00000392413 4402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
MMP28Q9H239 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
MMP28Q9H239 STK38L-201ENST00000389032 5068 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
MMP28Q9H239 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
MMP28Q9H239 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
MMP28Q9H239 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
MMP28Q9H239 AL035456.1-201ENST00000456064 1369 ntBASIC13.1□□□□□ -0.31
MMP28Q9H239 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC13.1□□□□□ -0.31
MMP28Q9H239 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
MMP28Q9H239 COL16A1-202ENST00000373668 3643 ntTSL 2 BASIC13.1□□□□□ -0.31
MMP28Q9H239 ANKZF1-201ENST00000323348 2579 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
MMP28Q9H239 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC13.1□□□□□ -0.31
MMP28Q9H239 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
MMP28Q9H239 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
MMP28Q9H239 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
MMP28Q9H239 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
MMP28Q9H239 LHFPL2-201ENST00000380345 5043 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
MMP28Q9H239 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC13.1□□□□□ -0.31
MMP28Q9H239 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
MMP28Q9H239 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
MMP28Q9H239 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
MMP28Q9H239 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC13.1□□□□□ -0.31
MMP28Q9H239 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC13.1□□□□□ -0.31
MMP28Q9H239 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC13.1□□□□□ -0.31
MMP28Q9H239 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC13.1□□□□□ -0.31
MMP28Q9H239 AC005498.2-205ENST00000593218 784 ntBASIC13.1□□□□□ -0.31
MMP28Q9H239 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
MMP28Q9H239 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC13.1□□□□□ -0.31
MMP28Q9H239 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC13.1□□□□□ -0.31
MMP28Q9H239 LGALS9-201ENST00000302228 3018 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
MMP28Q9H239 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
MMP28Q9H239 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
MMP28Q9H239 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC13.1□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms