Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
VPS13AQ96RL7 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC14.13□□□□□ -0.15
VPS13AQ96RL7 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
VPS13AQ96RL7 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
VPS13AQ96RL7 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
VPS13AQ96RL7 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
VPS13AQ96RL7 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC14.13□□□□□ -0.15
VPS13AQ96RL7 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
VPS13AQ96RL7 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
VPS13AQ96RL7 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
VPS13AQ96RL7 LINC00449-201ENST00000366259 872 ntTSL 2 BASIC14.13□□□□□ -0.15
VPS13AQ96RL7 AP000244.1-201ENST00000424582 201 ntBASIC14.13□□□□□ -0.15
VPS13AQ96RL7 FRGCA-201ENST00000424933 422 ntTSL 3 BASIC14.13□□□□□ -0.15
VPS13AQ96RL7 RNASEH2CP1-201ENST00000454281 502 ntBASIC14.13□□□□□ -0.15
VPS13AQ96RL7 PEBP1P3-201ENST00000455475 548 ntBASIC14.13□□□□□ -0.15
VPS13AQ96RL7 AC147876.1-201ENST00000504408 322 ntBASIC14.13□□□□□ -0.15
VPS13AQ96RL7 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
VPS13AQ96RL7 AC009093.2-201ENST00000563477 546 ntTSL 4 BASIC14.13□□□□□ -0.15
VPS13AQ96RL7 LOXL1-AS1-207ENST00000565689 735 ntTSL 3 BASIC14.13□□□□□ -0.15
VPS13AQ96RL7 AC079414.2-201ENST00000567157 1104 ntBASIC14.13□□□□□ -0.15
VPS13AQ96RL7 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
VPS13AQ96RL7 AC023024.2-201ENST00000623561 1993 ntBASIC14.13□□□□□ -0.15
VPS13AQ96RL7 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC14.13□□□□□ -0.15
VPS13AQ96RL7 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC14.13□□□□□ -0.15
VPS13AQ96RL7 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
VPS13AQ96RL7 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
VPS13AQ96RL7 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC14.12□□□□□ -0.15
VPS13AQ96RL7 LINC00682-202ENST00000499082 1384 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
VPS13AQ96RL7 RAB15-201ENST00000267512 3391 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
VPS13AQ96RL7 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
VPS13AQ96RL7 CCL17-201ENST00000219244 615 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
VPS13AQ96RL7 CMPK1-204ENST00000450808 950 ntTSL 2 BASIC14.12□□□□□ -0.15
VPS13AQ96RL7 AL121894.1-201ENST00000450971 436 ntTSL 2 BASIC14.12□□□□□ -0.15
VPS13AQ96RL7 AP003031.2-205ENST00000531263 683 ntTSL 2 BASIC14.12□□□□□ -0.15
VPS13AQ96RL7 KRT8P34-201ENST00000577607 1044 ntBASIC14.12□□□□□ -0.15
VPS13AQ96RL7 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
VPS13AQ96RL7 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC14.12□□□□□ -0.15
VPS13AQ96RL7 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC14.12□□□□□ -0.15
VPS13AQ96RL7 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
VPS13AQ96RL7 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC14.12□□□□□ -0.15
VPS13AQ96RL7 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
VPS13AQ96RL7 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC14.12□□□□□ -0.15
VPS13AQ96RL7 IL2RG-203ENST00000374202 1534 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
VPS13AQ96RL7 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
VPS13AQ96RL7 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC14.12□□□□□ -0.15
VPS13AQ96RL7 OR6S1-201ENST00000320704 996 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
VPS13AQ96RL7 CD300LG-203ENST00000377203 1060 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
VPS13AQ96RL7 AP000354.1-201ENST00000396982 456 ntBASIC14.12□□□□□ -0.15
VPS13AQ96RL7 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC14.12□□□□□ -0.15
VPS13AQ96RL7 CD300LF-206ENST00000464910 996 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
VPS13AQ96RL7 TSTD1-206ENST00000466967 477 ntTSL 2 BASIC14.12□□□□□ -0.15
VPS13AQ96RL7 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC14.12□□□□□ -0.15
VPS13AQ96RL7 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC14.12□□□□□ -0.15
VPS13AQ96RL7 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC14.12□□□□□ -0.15
VPS13AQ96RL7 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
VPS13AQ96RL7 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC14.12□□□□□ -0.15
VPS13AQ96RL7 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
VPS13AQ96RL7 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
VPS13AQ96RL7 IL18BP-201ENST00000260049 1354 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
VPS13AQ96RL7 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC14.12□□□□□ -0.15
VPS13AQ96RL7 MDH2-205ENST00000461263 648 ntTSL 2 BASIC14.12□□□□□ -0.15
VPS13AQ96RL7 TMEM222-203ENST00000464813 1071 ntTSL 2 BASIC14.12□□□□□ -0.15
VPS13AQ96RL7 AC008026.2-201ENST00000495438 348 ntBASIC14.12□□□□□ -0.15
VPS13AQ96RL7 ISL1-203ENST00000511384 981 ntTSL 5 BASIC14.12□□□□□ -0.15
VPS13AQ96RL7 CR383656.13-201ENST00000550928 563 ntTSL 3 BASIC14.12□□□□□ -0.15
VPS13AQ96RL7 AL512310.10-201ENST00000555580 563 ntTSL 3 BASIC14.12□□□□□ -0.15
VPS13AQ96RL7 LINC02252-201ENST00000565706 487 ntTSL 3 BASIC14.12□□□□□ -0.15
VPS13AQ96RL7 GACAT2-201ENST00000579368 818 ntTSL 2 BASIC14.12□□□□□ -0.15
VPS13AQ96RL7 AC011479.1-202ENST00000591889 528 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
VPS13AQ96RL7 AC022001.3-201ENST00000606330 596 ntBASIC14.12□□□□□ -0.15
VPS13AQ96RL7 Metazoa_SRP.200-201ENST00000622073 282 ntBASIC14.12□□□□□ -0.15
VPS13AQ96RL7 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
VPS13AQ96RL7 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
VPS13AQ96RL7 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
VPS13AQ96RL7 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
VPS13AQ96RL7 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
VPS13AQ96RL7 CFAP20-201ENST00000262498 1354 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
VPS13AQ96RL7 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
VPS13AQ96RL7 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC14.11□□□□□ -0.15
VPS13AQ96RL7 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
VPS13AQ96RL7 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC14.11□□□□□ -0.15
VPS13AQ96RL7 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC14.11□□□□□ -0.15
VPS13AQ96RL7 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC14.11□□□□□ -0.15
VPS13AQ96RL7 PDXDC2P-206ENST00000534700 1315 ntBASIC14.11□□□□□ -0.15
VPS13AQ96RL7 OLFML2B-202ENST00000367938 1153 ntTSL 2 BASIC14.11□□□□□ -0.15
VPS13AQ96RL7 CCDC12-202ENST00000425441 1097 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
VPS13AQ96RL7 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC14.11□□□□□ -0.15
VPS13AQ96RL7 NPAS3-209ENST00000551008 1002 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
VPS13AQ96RL7 AC023825.2-201ENST00000562970 672 ntTSL 2 BASIC14.11□□□□□ -0.15
VPS13AQ96RL7 ABCC6P1-203ENST00000565566 1170 ntBASIC14.11□□□□□ -0.15
VPS13AQ96RL7 RN7SL478P-201ENST00000584358 298 ntBASIC14.11□□□□□ -0.15
VPS13AQ96RL7 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC14.11□□□□□ -0.15
VPS13AQ96RL7 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
VPS13AQ96RL7 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC14.11□□□□□ -0.15
VPS13AQ96RL7 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
VPS13AQ96RL7 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
VPS13AQ96RL7 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
VPS13AQ96RL7 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
VPS13AQ96RL7 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
VPS13AQ96RL7 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 83.7 ms