Protein–RNA interactions for Protein: Q96P16

RPRD1A, Regulation of nuclear pre-mRNA domain-containing protein 1A, humanhuman

Predicted RBP Predictions only

Length 312 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPRD1AQ96P16 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RPRD1AQ96P16 AL354702.1-201ENST00000442006 1960 ntBASIC15.2■□□□□ 0.02
RPRD1AQ96P16 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RPRD1AQ96P16 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RPRD1AQ96P16 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RPRD1AQ96P16 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RPRD1AQ96P16 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RPRD1AQ96P16 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RPRD1AQ96P16 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 GRN-222ENST00000639447 1314 ntTSL 2 BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 AC139712.1-201ENST00000378256 1875 ntBASIC15.19■□□□□ 0.02
RPRD1AQ96P16 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 MIR4525-201ENST00000580000 75 ntBASIC15.19■□□□□ 0.02
RPRD1AQ96P16 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 AL022328.3-201ENST00000607943 679 ntBASIC15.19■□□□□ 0.02
RPRD1AQ96P16 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 AC006504.5-208ENST00000588784 2401 ntBASIC15.19■□□□□ 0.02
RPRD1AQ96P16 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 KRT8P29-201ENST00000420409 1371 ntBASIC15.19■□□□□ 0.02
RPRD1AQ96P16 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 AL136379.1-201ENST00000623471 2642 ntBASIC15.19■□□□□ 0.02
RPRD1AQ96P16 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 NIN-202ENST00000324330 4364 ntTSL 5 BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC15.19■□□□□ 0.02
RPRD1AQ96P16 AC244394.1-201ENST00000435000 1665 ntBASIC15.19■□□□□ 0.02
RPRD1AQ96P16 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC15.18■□□□□ 0.02
RPRD1AQ96P16 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RPRD1AQ96P16 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RPRD1AQ96P16 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RPRD1AQ96P16 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC15.18■□□□□ 0.02
RPRD1AQ96P16 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RPRD1AQ96P16 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RPRD1AQ96P16 AC018735.1-201ENST00000437208 1502 ntBASIC15.18■□□□□ 0.02
RPRD1AQ96P16 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RPRD1AQ96P16 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
RPRD1AQ96P16 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RPRD1AQ96P16 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC15.18■□□□□ 0.02
RPRD1AQ96P16 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC15.18■□□□□ 0.02
RPRD1AQ96P16 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC15.18■□□□□ 0.02
RPRD1AQ96P16 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
RPRD1AQ96P16 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RPRD1AQ96P16 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
RPRD1AQ96P16 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RPRD1AQ96P16 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC15.18■□□□□ 0.02
RPRD1AQ96P16 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
RPRD1AQ96P16 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC15.18■□□□□ 0.02
RPRD1AQ96P16 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RPRD1AQ96P16 FAM58BP-201ENST00000439056 645 ntBASIC15.18■□□□□ 0.02
RPRD1AQ96P16 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC15.18■□□□□ 0.02
RPRD1AQ96P16 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC15.18■□□□□ 0.02
RPRD1AQ96P16 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RPRD1AQ96P16 AC103988.2-201ENST00000561804 725 ntBASIC15.18■□□□□ 0.02
RPRD1AQ96P16 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC15.18■□□□□ 0.02
RPRD1AQ96P16 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RPRD1AQ96P16 MIR6720-201ENST00000611664 98 ntBASIC15.18■□□□□ 0.02
RPRD1AQ96P16 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC15.18■□□□□ 0.02
RPRD1AQ96P16 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC15.18■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms