Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 AC015922.1-201ENST00000421102 1152 ntBASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 MEP1AP4-201ENST00000423244 1087 ntBASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 AL353779.1-201ENST00000434793 351 ntBASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 MTND4LP12-201ENST00000448237 295 ntBASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 PFDN1-207ENST00000524074 395 ntTSL 5 BASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 CLCN6-201ENST00000312413 5631 ntTSL 2 BASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 GTF2IRD1-202ENST00000424337 3077 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 NRROS-201ENST00000328557 2564 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 ZNF501-205ENST00000620116 3382 ntAPPRIS P1 TSL 4 BASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 TCAF1P1-201ENST00000414990 2232 ntBASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 AC007541.1-201ENST00000570282 1469 ntBASIC13.87□□□□□ -0.19
DEPDC4Q8N2C3 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 RRN3P3-202ENST00000551766 3366 ntTSL 2 BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 AL391825.1-201ENST00000457671 1364 ntBASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 RIN3-201ENST00000216487 3859 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 EGR2-201ENST00000242480 2968 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 PTK7-212ENST00000476760 902 ntTSL 2 BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 AC010336.2-201ENST00000564226 506 ntBASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 AC009407.1-201ENST00000568958 598 ntBASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 AC108673.2-201ENST00000608909 565 ntBASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 RNA5-8SN1-201ENST00000610460 153 ntBASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 RNA5-8SN5-202ENST00000612463 153 ntBASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 RNA5-8SN4-201ENST00000613359 153 ntBASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 RNA5-8SN5-201ENST00000619471 153 ntBASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 AL035252.4-201ENST00000624174 288 ntBASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 AF228730.6-201ENST00000641497 218 ntBASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 AC084121.3-201ENST00000641716 218 ntBASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 AC105233.6-201ENST00000642093 218 ntBASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 DEK-201ENST00000244776 1441 ntTSL 2 BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC13.86□□□□□ -0.19
DEPDC4Q8N2C3 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms