Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
RNFT1Q5M7Z0 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RNFT1Q5M7Z0 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 AC015909.3-201ENST00000572855 1794 ntBASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 LBH-202ENST00000401506 485 ntTSL 3 BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 AL691447.1-201ENST00000419456 387 ntBASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 AC069218.1-201ENST00000435269 762 ntBASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 AC026803.1-201ENST00000569130 274 ntBASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 SPCS2P2-201ENST00000603270 608 ntBASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 AL109837.1-201ENST00000603272 613 ntBASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC13.23□□□□□ -0.29
RNFT1Q5M7Z0 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 AJ011931.1-201ENST00000618749 2492 ntBASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 AC006480.2-201ENST00000609770 1337 ntBASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 AC092384.3-202ENST00000564646 2873 ntBASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 NCR3-202ENST00000376071 541 ntTSL 5 BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 AL035696.2-201ENST00000407941 709 ntBASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 MPRIPP1-201ENST00000452433 1089 ntBASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RNFT1Q5M7Z0 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC13.22□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 59 ms