Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
MSX2P35548 ADAM17-203ENST00000497134 1873 ntTSL 5 BASIC14.13□□□□□ -0.15
MSX2P35548 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
MSX2P35548 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
MSX2P35548 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
MSX2P35548 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC14.13□□□□□ -0.15
MSX2P35548 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
MSX2P35548 FAM122C-203ENST00000414371 2119 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
MSX2P35548 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
MSX2P35548 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC14.13□□□□□ -0.15
MSX2P35548 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC14.13□□□□□ -0.15
MSX2P35548 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC14.13□□□□□ -0.15
MSX2P35548 AC040169.1-201ENST00000565382 521 ntBASIC14.13□□□□□ -0.15
MSX2P35548 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
MSX2P35548 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC14.13□□□□□ -0.15
MSX2P35548 GOLGA8IP-202ENST00000611635 2100 ntBASIC14.13□□□□□ -0.15
MSX2P35548 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
MSX2P35548 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
MSX2P35548 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
MSX2P35548 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
MSX2P35548 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC14.13□□□□□ -0.15
MSX2P35548 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC14.13□□□□□ -0.15
MSX2P35548 MED16-202ENST00000312090 3229 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
MSX2P35548 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC14.13□□□□□ -0.15
MSX2P35548 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC14.13□□□□□ -0.15
MSX2P35548 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
MSX2P35548 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
MSX2P35548 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
MSX2P35548 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC14.13□□□□□ -0.15
MSX2P35548 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC14.13□□□□□ -0.15
MSX2P35548 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC14.13□□□□□ -0.15
MSX2P35548 DRD2-201ENST00000346454 2433 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
MSX2P35548 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC14.13□□□□□ -0.15
MSX2P35548 TNIP3-201ENST00000057513 2416 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
MSX2P35548 TOLLIP-203ENST00000525159 3429 ntTSL 2 BASIC14.13□□□□□ -0.15
MSX2P35548 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
MSX2P35548 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
MSX2P35548 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC14.13□□□□□ -0.15
MSX2P35548 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC14.13□□□□□ -0.15
MSX2P35548 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
MSX2P35548 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC14.13□□□□□ -0.15
MSX2P35548 DMBT1P1-203ENST00000636837 4628 ntBASIC14.13□□□□□ -0.15
MSX2P35548 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
MSX2P35548 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC14.13□□□□□ -0.15
MSX2P35548 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
MSX2P35548 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
MSX2P35548 OSBPL2-201ENST00000313733 4009 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
MSX2P35548 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
MSX2P35548 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
MSX2P35548 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
MSX2P35548 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
MSX2P35548 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC14.12□□□□□ -0.15
MSX2P35548 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
MSX2P35548 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
MSX2P35548 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
MSX2P35548 GOLGA6L17P-202ENST00000614358 1398 ntBASIC14.12□□□□□ -0.15
MSX2P35548 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.15
MSX2P35548 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
MSX2P35548 GOSR2-235ENST00000640269 2190 ntTSL 5 BASIC14.12□□□□□ -0.15
MSX2P35548 AC011840.2-201ENST00000563063 1520 ntBASIC14.12□□□□□ -0.15
MSX2P35548 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC14.12□□□□□ -0.15
MSX2P35548 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
MSX2P35548 SYDE1-201ENST00000342784 3264 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
MSX2P35548 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
MSX2P35548 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC14.12□□□□□ -0.15
MSX2P35548 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
MSX2P35548 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
MSX2P35548 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
MSX2P35548 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
MSX2P35548 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
MSX2P35548 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC14.12□□□□□ -0.15
MSX2P35548 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC14.12□□□□□ -0.15
MSX2P35548 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC14.12□□□□□ -0.15
MSX2P35548 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC14.12□□□□□ -0.15
MSX2P35548 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC14.12□□□□□ -0.15
MSX2P35548 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC14.12□□□□□ -0.15
MSX2P35548 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC14.12□□□□□ -0.15
MSX2P35548 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC14.12□□□□□ -0.15
MSX2P35548 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
MSX2P35548 RPS15-202ENST00000585665 467 ntTSL 3 BASIC14.12□□□□□ -0.15
MSX2P35548 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC14.12□□□□□ -0.15
MSX2P35548 BX640515.1-201ENST00000617215 977 ntBASIC14.12□□□□□ -0.15
MSX2P35548 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
MSX2P35548 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
MSX2P35548 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
MSX2P35548 CCNE2-205ENST00000520509 3330 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
MSX2P35548 AHCY-205ENST00000538132 2366 ntTSL 2 BASIC14.12□□□□□ -0.15
MSX2P35548 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
MSX2P35548 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC14.12□□□□□ -0.15
MSX2P35548 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC14.12□□□□□ -0.15
MSX2P35548 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
MSX2P35548 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
MSX2P35548 FOXP3-204ENST00000455775 2448 ntTSL 5 BASIC14.12□□□□□ -0.15
MSX2P35548 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC14.12□□□□□ -0.15
MSX2P35548 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
MSX2P35548 AC093525.8-201ENST00000624099 1342 ntBASIC14.12□□□□□ -0.15
MSX2P35548 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
MSX2P35548 CLK3P2-201ENST00000427566 1453 ntBASIC14.12□□□□□ -0.15
MSX2P35548 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
MSX2P35548 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 152.2 ms