Protein–RNA interactions for Protein: P31275

HOXC12, Homeobox protein Hox-C12, humanhuman

Predictions only

Length 282 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC12P31275 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HOXC12P31275 MIR4741-201ENST00000579822 90 ntBASIC13.17□□□□□ -0.3
HOXC12P31275 AC104982.3-201ENST00000581995 514 ntBASIC13.17□□□□□ -0.3
HOXC12P31275 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXC12P31275 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
HOXC12P31275 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC13.17□□□□□ -0.3
HOXC12P31275 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC13.17□□□□□ -0.3
HOXC12P31275 BRWD1-201ENST00000333229 10141 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXC12P31275 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXC12P31275 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXC12P31275 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC13.17□□□□□ -0.3
HOXC12P31275 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC13.17□□□□□ -0.3
HOXC12P31275 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HOXC12P31275 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC13.17□□□□□ -0.3
HOXC12P31275 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXC12P31275 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXC12P31275 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXC12P31275 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
HOXC12P31275 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC13.17□□□□□ -0.3
HOXC12P31275 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC13.17□□□□□ -0.3
HOXC12P31275 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXC12P31275 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXC12P31275 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC13.17□□□□□ -0.3
HOXC12P31275 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC13.17□□□□□ -0.3
HOXC12P31275 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HOXC12P31275 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC13.17□□□□□ -0.3
HOXC12P31275 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HOXC12P31275 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXC12P31275 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXC12P31275 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
HOXC12P31275 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXC12P31275 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HOXC12P31275 SMARCA4-202ENST00000413806 5512 ntTSL 5 BASIC13.16□□□□□ -0.3
HOXC12P31275 MBTD1-204ENST00000586178 5382 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
HOXC12P31275 SLC4A1-201ENST00000262418 4965 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXC12P31275 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC13.16□□□□□ -0.3
HOXC12P31275 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXC12P31275 REXO1L2P-201ENST00000425429 2069 ntBASIC13.16□□□□□ -0.3
HOXC12P31275 SESN3-203ENST00000536441 9558 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
HOXC12P31275 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXC12P31275 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC13.16□□□□□ -0.3
HOXC12P31275 CA12-201ENST00000178638 6413 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXC12P31275 ZBED1P1-201ENST00000502364 1930 ntBASIC13.16□□□□□ -0.3
HOXC12P31275 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HOXC12P31275 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
HOXC12P31275 AC006486.2-201ENST00000624246 2199 ntBASIC13.16□□□□□ -0.3
HOXC12P31275 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXC12P31275 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXC12P31275 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXC12P31275 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC13.16□□□□□ -0.3
HOXC12P31275 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HOXC12P31275 CSH2-202ENST00000345366 598 ntTSL 5 BASIC13.16□□□□□ -0.3
HOXC12P31275 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
HOXC12P31275 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HOXC12P31275 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC13.16□□□□□ -0.3
HOXC12P31275 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HOXC12P31275 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HOXC12P31275 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXC12P31275 NDUFAB1P1-201ENST00000404262 460 ntBASIC13.16□□□□□ -0.3
HOXC12P31275 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
HOXC12P31275 HINT2P1-201ENST00000419438 481 ntBASIC13.16□□□□□ -0.3
HOXC12P31275 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXC12P31275 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC13.16□□□□□ -0.3
HOXC12P31275 APOA2-204ENST00000464492 530 ntTSL 3 BASIC13.16□□□□□ -0.3
HOXC12P31275 RN7SL769P-201ENST00000469386 295 ntBASIC13.16□□□□□ -0.3
HOXC12P31275 RPSAP36-202ENST00000494591 1261 ntBASIC13.16□□□□□ -0.3
HOXC12P31275 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC13.16□□□□□ -0.3
HOXC12P31275 ACR-203ENST00000529621 708 ntTSL 5 BASIC13.16□□□□□ -0.3
HOXC12P31275 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC13.16□□□□□ -0.3
HOXC12P31275 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC13.16□□□□□ -0.3
HOXC12P31275 HNRNPA1P48-202ENST00000565308 961 ntBASIC13.16□□□□□ -0.3
HOXC12P31275 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC13.16□□□□□ -0.3
HOXC12P31275 MIR3619-201ENST00000579667 83 ntBASIC13.16□□□□□ -0.3
HOXC12P31275 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC13.16□□□□□ -0.3
HOXC12P31275 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXC12P31275 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC13.16□□□□□ -0.3
HOXC12P31275 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
HOXC12P31275 CENPP-203ENST00000375587 8766 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXC12P31275 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXC12P31275 AC015818.8-201ENST00000587907 1519 ntBASIC13.16□□□□□ -0.3
HOXC12P31275 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
HOXC12P31275 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXC12P31275 AL137784.3-201ENST00000623858 2288 ntBASIC13.16□□□□□ -0.3
HOXC12P31275 ZNF536-201ENST00000355537 4945 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXC12P31275 ZEB1-AS1-208ENST00000607166 2503 ntBASIC13.16□□□□□ -0.3
HOXC12P31275 BUB1B-PAK6-201ENST00000441369 2767 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
HOXC12P31275 LINC00554-201ENST00000564841 3011 ntBASIC13.16□□□□□ -0.3
HOXC12P31275 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXC12P31275 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC13.16□□□□□ -0.3
HOXC12P31275 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC13.16□□□□□ -0.3
HOXC12P31275 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
HOXC12P31275 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HOXC12P31275 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC13.16□□□□□ -0.3
HOXC12P31275 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXC12P31275 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXC12P31275 LRRC8C-201ENST00000370454 7218 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXC12P31275 LMBRD2-201ENST00000296603 8185 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXC12P31275 ADGRG6-202ENST00000296932 6849 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HOXC12P31275 AC087386.2-201ENST00000623212 4637 ntBASIC13.16□□□□□ -0.3
HOXC12P31275 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC13.16□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 66.1 ms