Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC11.44□□□□□ -0.58
HOXD3P31249 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
HOXD3P31249 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
HOXD3P31249 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC11.44□□□□□ -0.58
HOXD3P31249 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC11.44□□□□□ -0.58
HOXD3P31249 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
HOXD3P31249 GPI-205ENST00000586425 1799 ntTSL 5 BASIC11.44□□□□□ -0.58
HOXD3P31249 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC11.44□□□□□ -0.58
HOXD3P31249 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
HOXD3P31249 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC11.44□□□□□ -0.58
HOXD3P31249 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC11.44□□□□□ -0.58
HOXD3P31249 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC11.44□□□□□ -0.58
HOXD3P31249 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC11.44□□□□□ -0.58
HOXD3P31249 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
HOXD3P31249 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC11.44□□□□□ -0.58
HOXD3P31249 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
HOXD3P31249 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC11.44□□□□□ -0.58
HOXD3P31249 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
HOXD3P31249 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC11.44□□□□□ -0.58
HOXD3P31249 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
HOXD3P31249 KCP-203ENST00000610776 5108 ntTSL 5 BASIC11.44□□□□□ -0.58
HOXD3P31249 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
HOXD3P31249 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
HOXD3P31249 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC11.44□□□□□ -0.58
HOXD3P31249 AC009093.2-202ENST00000620513 2079 ntBASIC11.44□□□□□ -0.58
HOXD3P31249 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC11.44□□□□□ -0.58
HOXD3P31249 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC11.44□□□□□ -0.58
HOXD3P31249 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
HOXD3P31249 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC11.44□□□□□ -0.58
HOXD3P31249 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
HOXD3P31249 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC11.44□□□□□ -0.58
HOXD3P31249 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
HOXD3P31249 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
HOXD3P31249 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
HOXD3P31249 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC11.44□□□□□ -0.58
HOXD3P31249 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC11.44□□□□□ -0.58
HOXD3P31249 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC11.44□□□□□ -0.58
HOXD3P31249 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
HOXD3P31249 HIST2H2BB-201ENST00000449108 381 ntBASIC11.44□□□□□ -0.58
HOXD3P31249 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC11.44□□□□□ -0.58
HOXD3P31249 ATP6V0CP2-201ENST00000469409 207 ntBASIC11.44□□□□□ -0.58
HOXD3P31249 RN7SL11P-201ENST00000471305 293 ntBASIC11.44□□□□□ -0.58
HOXD3P31249 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
HOXD3P31249 AC021723.1-201ENST00000486306 515 ntBASIC11.44□□□□□ -0.58
HOXD3P31249 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
HOXD3P31249 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
HOXD3P31249 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC11.44□□□□□ -0.58
HOXD3P31249 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC11.44□□□□□ -0.58
HOXD3P31249 MIR4683-201ENST00000579659 81 ntBASIC11.44□□□□□ -0.58
HOXD3P31249 HCG18-245ENST00000602550 559 ntTSL 4 BASIC11.44□□□□□ -0.58
HOXD3P31249 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
HOXD3P31249 AC091544.8-201ENST00000619490 361 ntBASIC11.44□□□□□ -0.58
HOXD3P31249 AP001002.3-201ENST00000623482 206 ntBASIC11.44□□□□□ -0.58
HOXD3P31249 CU633904.3-201ENST00000624042 1029 ntBASIC11.44□□□□□ -0.58
HOXD3P31249 AC015967.2-201ENST00000624092 234 ntBASIC11.44□□□□□ -0.58
HOXD3P31249 AC006435.4-201ENST00000625037 234 ntBASIC11.44□□□□□ -0.58
HOXD3P31249 AL356737.1-201ENST00000634391 234 ntBASIC11.44□□□□□ -0.58
HOXD3P31249 AC138627.1-207ENST00000641560 1006 ntBASIC11.44□□□□□ -0.58
HOXD3P31249 CICP23-201ENST00000605013 2741 ntBASIC11.44□□□□□ -0.58
HOXD3P31249 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
HOXD3P31249 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
HOXD3P31249 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC11.44□□□□□ -0.58
HOXD3P31249 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
HOXD3P31249 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
HOXD3P31249 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
HOXD3P31249 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
HOXD3P31249 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
HOXD3P31249 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC11.44□□□□□ -0.58
HOXD3P31249 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC11.44□□□□□ -0.58
HOXD3P31249 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
HOXD3P31249 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
HOXD3P31249 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
HOXD3P31249 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC11.44□□□□□ -0.58
HOXD3P31249 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
HOXD3P31249 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC11.44□□□□□ -0.58
HOXD3P31249 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
HOXD3P31249 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC11.44□□□□□ -0.58
HOXD3P31249 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC11.44□□□□□ -0.58
HOXD3P31249 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
HOXD3P31249 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
HOXD3P31249 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC11.44□□□□□ -0.58
HOXD3P31249 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC11.44□□□□□ -0.58
HOXD3P31249 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC11.44□□□□□ -0.58
HOXD3P31249 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
HOXD3P31249 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
HOXD3P31249 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC11.44□□□□□ -0.58
HOXD3P31249 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
HOXD3P31249 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC11.44□□□□□ -0.58
HOXD3P31249 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC11.43□□□□□ -0.58
HOXD3P31249 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
HOXD3P31249 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC11.43□□□□□ -0.58
HOXD3P31249 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC11.43□□□□□ -0.58
HOXD3P31249 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
HOXD3P31249 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
HOXD3P31249 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
HOXD3P31249 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
HOXD3P31249 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
HOXD3P31249 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC11.43□□□□□ -0.58
HOXD3P31249 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
HOXD3P31249 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms