Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SMARCA1P28370 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SMARCA1P28370 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SMARCA1P28370 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SMARCA1P28370 AC005912.2-201ENST00000619492 2400 ntBASIC16.78■□□□□ 0.28
SMARCA1P28370 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
SMARCA1P28370 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
SMARCA1P28370 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
SMARCA1P28370 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SMARCA1P28370 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SMARCA1P28370 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SMARCA1P28370 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
SMARCA1P28370 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SMARCA1P28370 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
SMARCA1P28370 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
SMARCA1P28370 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SMARCA1P28370 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC16.77■□□□□ 0.28
SMARCA1P28370 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC16.77■□□□□ 0.28
SMARCA1P28370 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC16.77■□□□□ 0.28
SMARCA1P28370 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
SMARCA1P28370 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SMARCA1P28370 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SMARCA1P28370 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SMARCA1P28370 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
SMARCA1P28370 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SMARCA1P28370 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC16.77■□□□□ 0.28
SMARCA1P28370 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC16.77■□□□□ 0.28
SMARCA1P28370 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC16.77■□□□□ 0.28
SMARCA1P28370 REEP1-202ENST00000453231 940 ntTSL 2 BASIC16.77■□□□□ 0.28
SMARCA1P28370 RCC2P8-201ENST00000502779 1035 ntBASIC16.77■□□□□ 0.28
SMARCA1P28370 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
SMARCA1P28370 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SMARCA1P28370 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SMARCA1P28370 NOP2-211ENST00000540228 668 ntTSL 2 BASIC16.77■□□□□ 0.28
SMARCA1P28370 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC16.77■□□□□ 0.28
SMARCA1P28370 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC16.77■□□□□ 0.28
SMARCA1P28370 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC16.77■□□□□ 0.28
SMARCA1P28370 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC16.77■□□□□ 0.28
SMARCA1P28370 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
SMARCA1P28370 AC092299.1-201ENST00000632679 757 ntBASIC16.77■□□□□ 0.28
SMARCA1P28370 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
SMARCA1P28370 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.28
SMARCA1P28370 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC16.77■□□□□ 0.27
SMARCA1P28370 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SMARCA1P28370 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SMARCA1P28370 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SMARCA1P28370 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
SMARCA1P28370 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC16.77■□□□□ 0.27
SMARCA1P28370 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SMARCA1P28370 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
SMARCA1P28370 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SMARCA1P28370 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
SMARCA1P28370 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
SMARCA1P28370 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SMARCA1P28370 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC16.76■□□□□ 0.27
SMARCA1P28370 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
SMARCA1P28370 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
SMARCA1P28370 COCH-203ENST00000460581 2688 ntTSL 2 BASIC16.76■□□□□ 0.27
SMARCA1P28370 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SMARCA1P28370 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC16.76■□□□□ 0.27
SMARCA1P28370 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SMARCA1P28370 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC16.76■□□□□ 0.27
SMARCA1P28370 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
SMARCA1P28370 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC16.76■□□□□ 0.27
SMARCA1P28370 ADK-205ENST00000539909 1866 ntTSL 2 BASIC16.76■□□□□ 0.27
SMARCA1P28370 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC16.76■□□□□ 0.27
SMARCA1P28370 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC16.76■□□□□ 0.27
SMARCA1P28370 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
SMARCA1P28370 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
SMARCA1P28370 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
SMARCA1P28370 AC097359.2-201ENST00000604992 2389 ntBASIC16.76■□□□□ 0.27
SMARCA1P28370 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
SMARCA1P28370 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SMARCA1P28370 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SMARCA1P28370 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC16.76■□□□□ 0.27
SMARCA1P28370 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
SMARCA1P28370 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC16.76■□□□□ 0.27
SMARCA1P28370 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SMARCA1P28370 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
SMARCA1P28370 SLC16A6P1-201ENST00000413214 1059 ntBASIC16.76■□□□□ 0.27
SMARCA1P28370 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SMARCA1P28370 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC16.76■□□□□ 0.27
SMARCA1P28370 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC16.76■□□□□ 0.27
SMARCA1P28370 AC140658.4-201ENST00000561990 352 ntBASIC16.76■□□□□ 0.27
SMARCA1P28370 RN7SL774P-201ENST00000577467 290 ntBASIC16.76■□□□□ 0.27
SMARCA1P28370 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC16.76■□□□□ 0.27
SMARCA1P28370 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC16.76■□□□□ 0.27
SMARCA1P28370 AL157813.1-201ENST00000612996 587 ntBASIC16.76■□□□□ 0.27
SMARCA1P28370 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC16.76■□□□□ 0.27
SMARCA1P28370 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SMARCA1P28370 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SMARCA1P28370 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SMARCA1P28370 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SMARCA1P28370 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
SMARCA1P28370 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SMARCA1P28370 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
SMARCA1P28370 LINC02228-204ENST00000642115 2962 ntBASIC16.76■□□□□ 0.27
SMARCA1P28370 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SMARCA1P28370 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
SMARCA1P28370 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms