Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC17.09■□□□□ 0.33
ERCC3P19447 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
ERCC3P19447 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC17.09■□□□□ 0.33
ERCC3P19447 ISCA2P1-201ENST00000425548 448 ntBASIC17.09■□□□□ 0.33
ERCC3P19447 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC17.09■□□□□ 0.33
ERCC3P19447 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC17.09■□□□□ 0.33
ERCC3P19447 AC234782.1-201ENST00000451950 919 ntBASIC17.09■□□□□ 0.33
ERCC3P19447 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC17.09■□□□□ 0.33
ERCC3P19447 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC17.09■□□□□ 0.33
ERCC3P19447 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC17.09■□□□□ 0.33
ERCC3P19447 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
ERCC3P19447 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
ERCC3P19447 AC009779.1-201ENST00000551138 283 ntBASIC17.09■□□□□ 0.33
ERCC3P19447 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC17.09■□□□□ 0.33
ERCC3P19447 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC17.09■□□□□ 0.33
ERCC3P19447 AC008825.2-201ENST00000603374 718 ntBASIC17.09■□□□□ 0.33
ERCC3P19447 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC17.09■□□□□ 0.33
ERCC3P19447 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ERCC3P19447 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ERCC3P19447 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
ERCC3P19447 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ERCC3P19447 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
ERCC3P19447 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
ERCC3P19447 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC17.09■□□□□ 0.33
ERCC3P19447 MBLAC2-202ENST00000514906 1936 ntBASIC17.09■□□□□ 0.33
ERCC3P19447 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
ERCC3P19447 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ERCC3P19447 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
ERCC3P19447 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ERCC3P19447 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC17.09■□□□□ 0.33
ERCC3P19447 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
ERCC3P19447 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ERCC3P19447 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
ERCC3P19447 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
ERCC3P19447 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
ERCC3P19447 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
ERCC3P19447 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC17.08■□□□□ 0.33
ERCC3P19447 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
ERCC3P19447 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
ERCC3P19447 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
ERCC3P19447 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
ERCC3P19447 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
ERCC3P19447 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC17.08■□□□□ 0.33
ERCC3P19447 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
ERCC3P19447 AMT-204ENST00000427987 1646 ntTSL 5 BASIC17.08■□□□□ 0.32
ERCC3P19447 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC17.08■□□□□ 0.32
ERCC3P19447 MVK-214ENST00000629016 1591 ntTSL 5 BASIC17.08■□□□□ 0.32
ERCC3P19447 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ERCC3P19447 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC17.08■□□□□ 0.32
ERCC3P19447 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
ERCC3P19447 AL008718.2-201ENST00000609206 1313 ntBASIC17.08■□□□□ 0.32
ERCC3P19447 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC17.08■□□□□ 0.32
ERCC3P19447 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
ERCC3P19447 UFM1-202ENST00000379649 846 ntTSL 4 BASIC17.08■□□□□ 0.32
ERCC3P19447 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
ERCC3P19447 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ERCC3P19447 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC17.08■□□□□ 0.32
ERCC3P19447 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC17.08■□□□□ 0.32
ERCC3P19447 AC012441.2-201ENST00000444843 739 ntBASIC17.08■□□□□ 0.32
ERCC3P19447 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC17.08■□□□□ 0.32
ERCC3P19447 RCC2P8-201ENST00000502779 1035 ntBASIC17.08■□□□□ 0.32
ERCC3P19447 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC17.08■□□□□ 0.32
ERCC3P19447 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC17.08■□□□□ 0.32
ERCC3P19447 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC17.08■□□□□ 0.32
ERCC3P19447 MIR5572-201ENST00000583188 137 ntBASIC17.08■□□□□ 0.32
ERCC3P19447 U62317.3-201ENST00000608319 855 ntBASIC17.08■□□□□ 0.32
ERCC3P19447 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC17.08■□□□□ 0.32
ERCC3P19447 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC17.08■□□□□ 0.32
ERCC3P19447 MIR6727-201ENST00000620702 65 ntBASIC17.08■□□□□ 0.32
ERCC3P19447 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
ERCC3P19447 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ERCC3P19447 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ERCC3P19447 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
ERCC3P19447 AC139749.1-202ENST00000617529 3139 ntBASIC17.08■□□□□ 0.32
ERCC3P19447 AC104581.4-201ENST00000623126 3052 ntBASIC17.08■□□□□ 0.32
ERCC3P19447 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC17.08■□□□□ 0.32
ERCC3P19447 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC17.08■□□□□ 0.32
ERCC3P19447 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
ERCC3P19447 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ERCC3P19447 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ERCC3P19447 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC17.08■□□□□ 0.32
ERCC3P19447 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
ERCC3P19447 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ERCC3P19447 PARN-202ENST00000420015 2360 ntTSL 2 BASIC17.08■□□□□ 0.32
ERCC3P19447 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ERCC3P19447 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
ERCC3P19447 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ERCC3P19447 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ERCC3P19447 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
ERCC3P19447 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ERCC3P19447 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
ERCC3P19447 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
ERCC3P19447 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC17.07■□□□□ 0.32
ERCC3P19447 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC17.07■□□□□ 0.32
ERCC3P19447 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
ERCC3P19447 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
ERCC3P19447 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
ERCC3P19447 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC17.07■□□□□ 0.32
ERCC3P19447 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
ERCC3P19447 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms