Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TPM1P09493 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC16.35■□□□□ 0.21
TPM1P09493 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC16.35■□□□□ 0.21
TPM1P09493 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC16.35■□□□□ 0.21
TPM1P09493 FAM189A1-201ENST00000261275 4705 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
TPM1P09493 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
TPM1P09493 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
TPM1P09493 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC16.35■□□□□ 0.21
TPM1P09493 AC015909.5-201ENST00000624336 2266 ntBASIC16.35■□□□□ 0.21
TPM1P09493 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC16.35■□□□□ 0.21
TPM1P09493 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC16.35■□□□□ 0.21
TPM1P09493 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TPM1P09493 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TPM1P09493 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TPM1P09493 IFNA6-202ENST00000380210 1544 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
TPM1P09493 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
TPM1P09493 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC16.34■□□□□ 0.21
TPM1P09493 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
TPM1P09493 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
TPM1P09493 SH3PXD2B-201ENST00000311601 7777 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TPM1P09493 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TPM1P09493 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
TPM1P09493 SESN3-203ENST00000536441 9558 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
TPM1P09493 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TPM1P09493 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
TPM1P09493 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
TPM1P09493 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TPM1P09493 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC16.34■□□□□ 0.21
TPM1P09493 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TPM1P09493 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC16.34■□□□□ 0.21
TPM1P09493 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TPM1P09493 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TPM1P09493 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TPM1P09493 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
TPM1P09493 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC16.34■□□□□ 0.21
TPM1P09493 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC16.34■□□□□ 0.21
TPM1P09493 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC16.34■□□□□ 0.21
TPM1P09493 CNN2P11-201ENST00000429351 262 ntBASIC16.34■□□□□ 0.21
TPM1P09493 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC16.34■□□□□ 0.21
TPM1P09493 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC16.34■□□□□ 0.21
TPM1P09493 VPS29-207ENST00000549970 818 ntTSL 3 BASIC16.34■□□□□ 0.21
TPM1P09493 HK2-201ENST00000290573 5772 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TPM1P09493 TCF12-201ENST00000267811 6061 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TPM1P09493 MEAF6-203ENST00000373074 2005 ntTSL 2 BASIC16.34■□□□□ 0.21
TPM1P09493 WDFY2-203ENST00000612477 6932 ntTSL 2 BASIC16.34■□□□□ 0.21
TPM1P09493 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
TPM1P09493 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TPM1P09493 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TPM1P09493 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
TPM1P09493 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TPM1P09493 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TPM1P09493 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
TPM1P09493 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TPM1P09493 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC16.34■□□□□ 0.21
TPM1P09493 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
TPM1P09493 AC130686.1-201ENST00000622936 2466 ntBASIC16.34■□□□□ 0.21
TPM1P09493 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
TPM1P09493 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
TPM1P09493 PAQR3-209ENST00000512733 9811 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
TPM1P09493 GAS6-AS1-201ENST00000458001 7169 ntTSL 5 BASIC16.33■□□□□ 0.21
TPM1P09493 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC16.33■□□□□ 0.21
TPM1P09493 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC16.33■□□□□ 0.21
TPM1P09493 ADK-205ENST00000539909 1866 ntTSL 2 BASIC16.33■□□□□ 0.21
TPM1P09493 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC16.33■□□□□ 0.21
TPM1P09493 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC16.33■□□□□ 0.21
TPM1P09493 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.21
TPM1P09493 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
TPM1P09493 PCK2-216ENST00000561286 2012 ntTSL 2 BASIC16.33■□□□□ 0.21
TPM1P09493 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
TPM1P09493 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
TPM1P09493 RIPOR3-202ENST00000327979 4377 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
TPM1P09493 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TPM1P09493 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC16.33■□□□□ 0.2
TPM1P09493 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC16.33■□□□□ 0.2
TPM1P09493 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC16.33■□□□□ 0.2
TPM1P09493 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC16.33■□□□□ 0.2
TPM1P09493 AC112482.1-201ENST00000492080 688 ntBASIC16.33■□□□□ 0.2
TPM1P09493 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
TPM1P09493 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
TPM1P09493 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC16.33■□□□□ 0.2
TPM1P09493 SSH2-210ENST00000582084 560 ntTSL 3 BASIC16.33■□□□□ 0.2
TPM1P09493 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC16.33■□□□□ 0.2
TPM1P09493 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
TPM1P09493 AC107373.2-201ENST00000607735 490 ntBASIC16.33■□□□□ 0.2
TPM1P09493 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
TPM1P09493 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TPM1P09493 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TPM1P09493 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC16.33■□□□□ 0.2
TPM1P09493 KRT8P14-201ENST00000414254 1442 ntBASIC16.33■□□□□ 0.2
TPM1P09493 GPRC5A-201ENST00000014914 7362 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TPM1P09493 EPHB1-201ENST00000398015 4672 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TPM1P09493 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
TPM1P09493 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TPM1P09493 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
TPM1P09493 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TPM1P09493 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC16.33■□□□□ 0.2
TPM1P09493 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TPM1P09493 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TPM1P09493 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC16.33■□□□□ 0.2
TPM1P09493 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms