Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC17.15■□□□□ 0.34
CDKL5O76039 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC17.15■□□□□ 0.34
CDKL5O76039 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDKL5O76039 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDKL5O76039 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CDKL5O76039 MXI1-205ENST00000393134 889 ntTSL 2 BASIC17.15■□□□□ 0.34
CDKL5O76039 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDKL5O76039 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CDKL5O76039 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
CDKL5O76039 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC17.15■□□□□ 0.34
CDKL5O76039 AC112492.5-201ENST00000421897 457 ntBASIC17.15■□□□□ 0.34
CDKL5O76039 PTPA-215ENST00000432124 567 ntTSL 4 BASIC17.15■□□□□ 0.34
CDKL5O76039 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CDKL5O76039 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC17.15■□□□□ 0.34
CDKL5O76039 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC17.15■□□□□ 0.34
CDKL5O76039 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC17.15■□□□□ 0.34
CDKL5O76039 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC17.15■□□□□ 0.34
CDKL5O76039 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC17.15■□□□□ 0.34
CDKL5O76039 AL162274.1-201ENST00000617191 1098 ntBASIC17.15■□□□□ 0.34
CDKL5O76039 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CDKL5O76039 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CDKL5O76039 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDKL5O76039 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC17.15■□□□□ 0.34
CDKL5O76039 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDKL5O76039 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDKL5O76039 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDKL5O76039 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CDKL5O76039 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDKL5O76039 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDKL5O76039 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CDKL5O76039 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC17.15■□□□□ 0.34
CDKL5O76039 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDKL5O76039 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDKL5O76039 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDKL5O76039 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC17.15■□□□□ 0.34
CDKL5O76039 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDKL5O76039 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
CDKL5O76039 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CDKL5O76039 AC009093.10-201ENST00000641956 1442 ntBASIC17.14■□□□□ 0.33
CDKL5O76039 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC17.14■□□□□ 0.33
CDKL5O76039 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDKL5O76039 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDKL5O76039 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDKL5O76039 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDKL5O76039 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC17.14■□□□□ 0.33
CDKL5O76039 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDKL5O76039 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CDKL5O76039 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDKL5O76039 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CDKL5O76039 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC17.14■□□□□ 0.33
CDKL5O76039 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CDKL5O76039 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CDKL5O76039 RGS5-214ENST00000429865 754 ntTSL 3 BASIC17.14■□□□□ 0.33
CDKL5O76039 KLF2P4-201ENST00000451959 1225 ntBASIC17.14■□□□□ 0.33
CDKL5O76039 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC17.14■□□□□ 0.33
CDKL5O76039 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC17.14■□□□□ 0.33
CDKL5O76039 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC17.14■□□□□ 0.33
CDKL5O76039 SORD2P-201ENST00000558556 1069 ntBASIC17.14■□□□□ 0.33
CDKL5O76039 C2orf69P2-201ENST00000562032 1123 ntBASIC17.14■□□□□ 0.33
CDKL5O76039 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC17.14■□□□□ 0.33
CDKL5O76039 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC17.14■□□□□ 0.33
CDKL5O76039 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC17.14■□□□□ 0.33
CDKL5O76039 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC17.14■□□□□ 0.33
CDKL5O76039 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC17.14■□□□□ 0.33
CDKL5O76039 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDKL5O76039 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
CDKL5O76039 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC17.14■□□□□ 0.33
CDKL5O76039 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC17.14■□□□□ 0.33
CDKL5O76039 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC17.14■□□□□ 0.33
CDKL5O76039 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC17.14■□□□□ 0.33
CDKL5O76039 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC17.14■□□□□ 0.33
CDKL5O76039 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC17.14■□□□□ 0.33
CDKL5O76039 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CDKL5O76039 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC17.14■□□□□ 0.33
CDKL5O76039 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDKL5O76039 ADK-205ENST00000539909 1866 ntTSL 2 BASIC17.14■□□□□ 0.33
CDKL5O76039 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDKL5O76039 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDKL5O76039 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
CDKL5O76039 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CDKL5O76039 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDKL5O76039 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDKL5O76039 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC17.13■□□□□ 0.33
CDKL5O76039 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC17.13■□□□□ 0.33
CDKL5O76039 KRT8P4-201ENST00000509735 1454 ntBASIC17.13■□□□□ 0.33
CDKL5O76039 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC17.13■□□□□ 0.33
CDKL5O76039 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC17.13■□□□□ 0.33
CDKL5O76039 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDKL5O76039 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC17.13■□□□□ 0.33
CDKL5O76039 GOLGA8VP-201ENST00000559009 1798 ntBASIC17.13■□□□□ 0.33
CDKL5O76039 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC17.13■□□□□ 0.33
CDKL5O76039 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDKL5O76039 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDKL5O76039 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CDKL5O76039 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC17.13■□□□□ 0.33
CDKL5O76039 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDKL5O76039 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CDKL5O76039 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC17.13■□□□□ 0.33
CDKL5O76039 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC17.13■□□□□ 0.33
CDKL5O76039 CROCCP4-201ENST00000457096 498 ntBASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 65.1 ms