Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 AGGF1P1-201ENST00000509500 2073 ntBASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 MVK-214ENST00000629016 1591 ntTSL 5 BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 KRT8P14-201ENST00000414254 1442 ntBASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 PIN1P1-201ENST00000412108 996 ntBASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 AC005252.2-201ENST00000624630 1141 ntBASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 OCRL-202ENST00000371113 5162 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 MED14-201ENST00000324817 7984 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 MST1P2-201ENST00000457982 2291 ntBASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 AC016397.2-201ENST00000624848 1985 ntBASIC13□□□□□ -0.33
RHBDD3Q9Y3P4 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
RHBDD3Q9Y3P4 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC12.99□□□□□ -0.33
RHBDD3Q9Y3P4 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
RHBDD3Q9Y3P4 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC12.99□□□□□ -0.33
RHBDD3Q9Y3P4 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
RHBDD3Q9Y3P4 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
RHBDD3Q9Y3P4 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
RHBDD3Q9Y3P4 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
RHBDD3Q9Y3P4 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
RHBDD3Q9Y3P4 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
RHBDD3Q9Y3P4 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC12.99□□□□□ -0.33
RHBDD3Q9Y3P4 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC12.99□□□□□ -0.33
RHBDD3Q9Y3P4 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
RHBDD3Q9Y3P4 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
RHBDD3Q9Y3P4 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
RHBDD3Q9Y3P4 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
RHBDD3Q9Y3P4 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
RHBDD3Q9Y3P4 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
RHBDD3Q9Y3P4 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
RHBDD3Q9Y3P4 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC12.99□□□□□ -0.33
RHBDD3Q9Y3P4 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC12.99□□□□□ -0.33
RHBDD3Q9Y3P4 RPS15-201ENST00000233609 534 ntTSL 2 BASIC12.99□□□□□ -0.33
RHBDD3Q9Y3P4 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
RHBDD3Q9Y3P4 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
RHBDD3Q9Y3P4 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC12.99□□□□□ -0.33
RHBDD3Q9Y3P4 KLF2P2-201ENST00000416807 1039 ntBASIC12.99□□□□□ -0.33
RHBDD3Q9Y3P4 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
RHBDD3Q9Y3P4 AC114812.1-204ENST00000449669 728 ntBASIC12.99□□□□□ -0.33
RHBDD3Q9Y3P4 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
RHBDD3Q9Y3P4 AC190387.1-201ENST00000551683 408 ntBASIC12.99□□□□□ -0.33
RHBDD3Q9Y3P4 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC12.99□□□□□ -0.33
RHBDD3Q9Y3P4 RPS15-202ENST00000585665 467 ntTSL 3 BASIC12.99□□□□□ -0.33
RHBDD3Q9Y3P4 RPS15-205ENST00000586686 562 ntTSL 5 BASIC12.99□□□□□ -0.33
RHBDD3Q9Y3P4 RPS15-208ENST00000591804 711 ntTSL 5 BASIC12.99□□□□□ -0.33
RHBDD3Q9Y3P4 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC12.99□□□□□ -0.33
RHBDD3Q9Y3P4 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
RHBDD3Q9Y3P4 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC12.99□□□□□ -0.33
RHBDD3Q9Y3P4 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
RHBDD3Q9Y3P4 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
RHBDD3Q9Y3P4 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
RHBDD3Q9Y3P4 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
RHBDD3Q9Y3P4 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms